| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,753,993 – 8,754,101 |
| Length | 108 |
| Max. P | 0.961701 |
| Location | 8,753,993 – 8,754,101 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 88.13 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -28.98 |
| Energy contribution | -29.28 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8753993 108 + 22407834 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCACCC-----------AC ...........((((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....))))))....-----------.. ( -33.70) >DroSec_CAF1 58272 119 + 1 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCACCCCCCCCCUACUAAC ...........((((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....))))))................. ( -33.70) >DroSim_CAF1 61325 118 + 1 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCAUCCC-CCCCUACUAAC ...........((((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....)))))).....-........... ( -33.70) >DroEre_CAF1 62143 109 + 1 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCCCCUCUC----------AAAA ..........(((..(((....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..))))))).....)))..)))----------.... ( -29.60) >DroYak_CAF1 60821 119 + 1 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACGCCCAACUCUCCCCCUCCCCCACGC ..........((((.((((...(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))..)))).))))................ ( -33.90) >DroAna_CAF1 58456 102 + 1 UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACGCCUGCCC----------------- ..........(((.(((((...(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))..))))))))----------------- ( -34.40) >consensus UUCAUUUUACGGGUCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCAUCC__________AAC ...........((((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....))))))................. (-28.98 = -29.28 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:23 2006