| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 878,948 – 879,066 |
| Length | 118 |
| Max. P | 0.684794 |
| Location | 878,948 – 879,066 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -46.49 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 878948 118 - 22407834 AUUCACCGGGACUCAAACAGUCGGCUAUGGUGAAGCACUUCACCGUCCAACCCAUUCCGUGCGAGCAGCACGGUUACGUCCUUGACCUGGGUUCCAUGGCCAGGAACUCCGUGCGGCG ..((.((((((((.....))))((..((((((((....))))))))))........))).).))((.((((((.....((((.(.(((((...))).))).))))...)))))).)). ( -43.20) >DroPse_CAF1 7093 118 - 1 AGGCGGCCAGCUACAAGCUGCCGCCGAAUGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCAGGGCCACAUCCUGGACCUUGGUCAUCUCAAUCGCAACACCUUGCGCCG .((((((.(((.....)))))))))((..(((((....))))).(((((.......((((((.....))))))........))))).....))........(((((....)))))... ( -43.56) >DroEre_CAF1 10695 118 - 1 GCUCCCCGGGACUCAAGCAGUCGGCUAUGGUGAAGCACUUCACCGUCCAAACCAUUCCGUGCGAGCAGCACGGCUACGUCCUGGACCUGGGCUCCUUGCCCAGGAACACCCUGCGCCG ((...(((((((...(((....((..((((((((....)))))))))).........(((((.....))))))))..))))))).(((((((.....)))))))........)).... ( -52.50) >DroYak_CAF1 7090 118 - 1 CCUCCCCGGGACUCAAGCAGGCGGCGAUGGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCACGGUUACGUCCUGGACUUGGGUUCCCUGGCCAGGAACACCGUGCGGCG (((....)))......(((((.((.(((((((((....)))))))))....))....)))))..((.(((((((....((((((.((.((....)).))))))))..))))))).)). ( -53.80) >DroAna_CAF1 7783 118 - 1 AAGUUCCGGGCUUCAAGCAGCCAGCGAUGGUCAAGCACUUCACCGUGCAGCCCAUUCCCUGCGAGCAGCAGAGCUACGUCCUGGAACUGGGUCCGCUCAUGUGGAACACCCUGCGAAA .(((((((((((.......((((....))))...((((......))))))))).....((((.....))))...........))))))((((((((....)))))...)))....... ( -42.50) >DroPer_CAF1 7096 118 - 1 AGGCGGCCAGCUACAAGCUGCCGCCGAAUGUCAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCAGGGCCACAUCCUGGACCUUGGUCAUCUCAAUCGCAACACCUUGCGCCG .((((((.(((.....)))))))))((((((((((.........(((((.......((((((.....))))))........)))))))))).))).))...(((((....)))))... ( -43.36) >consensus ACGCCCCGGGACUCAAGCAGCCGGCGAUGGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCACGGCUACGUCCUGGACCUGGGUCCCCUCACCAGGAACACCCUGCGCCG .....((.((.........(((......((((((....))))))(((((.......((((((.....))))))........)))))...))).......)).)).............. (-19.30 = -19.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006