Locus 3058

Sequence ID 2L_DroMel_CAF1
Location 8,747,553 – 8,747,645
Length 92
Max. P 0.555074
window4866

overview

Window 6

Location 8,747,553 – 8,747,645
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.52
Mean single sequence MFE -29.32
Consensus MFE -20.94
Energy contribution -21.97
Covariance contribution 1.03
Combinations/Pair 1.08
Mean z-score -1.75
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.555074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8747553 92 + 22407834
GGGCGUGGG--------UGGGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACACGCGGC
..(((((((--------..(((((((((....-))))..(((((....))))))))).)..))....((((.......))))...........)))))... ( -31.40)
>DroPse_CAF1 70321 79 + 1
----------------------GAAAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCAC
----------------------.((((((....))))))((((((.(((((((....))).))))..((((.......))))......))))))....... ( -22.30)
>DroSec_CAF1 51781 90 + 1
GGGCGUGGG--------UGGGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCA--
..(((((((--------..(((((((((....-))))..(((((....))))))))).)..))....((((.......))))...........))))).-- ( -31.00)
>DroYak_CAF1 54133 100 + 1
CGGCGUGGGUGUGUGUGUGUGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCGGC
(.((((((((((((((((....(((((((.(.-.....).)))))))....)))))))).)))....((((.......))))...........))))).). ( -33.20)
>DroAna_CAF1 51654 95 + 1
GGGCGUUGG------GCAAGGAGUGAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCGC
.((((((.(------(((((((((......))))))).((((((....))))))......))).)))))).........(((((..........))))).. ( -35.70)
>DroPer_CAF1 66726 79 + 1
----------------------GAAAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCAC
----------------------.((((((....))))))((((((.(((((((....))).))))..((((.......))))......))))))....... ( -22.30)
>consensus
GGGCGUGGG________UGGGUGUGAGGGAAU_CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCGC
..((((..................(((((....))))).((((((.(((((((....))).))))..((((.......))))......))))))))))... (-20.94 = -21.97 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:18 2006