| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,744,729 – 8,744,824 |
| Length | 95 |
| Max. P | 0.660383 |
| Location | 8,744,729 – 8,744,824 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -19.95 |
| Energy contribution | -20.28 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8744729 95 - 22407834 ---------------------AAAUUGCUGCAAACCAGAAAUCAUUGAGUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGGUGGCAAUGAGGGGGUAGUUUUUGGGU ---------------------.((..(((((...((.....(((((((.(((((.(....)))))).)...(((.((((.....))))..))))))))).)).)))))..)).... ( -28.00) >DroSec_CAF1 48822 95 - 1 ---------------------AAAUUGCUGCAAACCAGAAAUCAUUGAAUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGGUGGAAAUGAGGGGGUAGUUUCUUUUU ---------------------.....(((((...((.....(((((((.(((((.(....))))))...))(((.((((.....))))..))).))))).)).)))))........ ( -25.30) >DroSim_CAF1 51637 95 - 1 ---------------------AAAUUGCUGCAAACCAGAAAUCAUUGAGUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGGUGGAAAUGAGGGGGUAGUUUCUUUUU ---------------------.....(((((...((......(((((((((.........)))))))))..(((.((((.....))))..)))......))..)))))........ ( -25.70) >DroEre_CAF1 52351 93 - 1 ---------------------AAAUUGCUGCAAACCAGAAAUCAUUGAGUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGGUGGAAAUGAGGGGGUAGUUUUGAG-- ---------------------.....(((((...((......(((((((((.........)))))))))..(((.((((.....))))..)))......))..)))))......-- ( -25.70) >DroYak_CAF1 50746 93 - 1 ---------------------AAAUUGCUGCAAACCAGAAAUCAUUGAGUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGCUGGAAAUGAGGGGGUAGUUUUGUG-- ---------------------.....(((((...((......(((((((((.........)))))))))..(((.((((.....))))..)))......))..)))))......-- ( -25.50) >DroPer_CAF1 63941 110 - 1 UCUGCUUGGCAUAGGGUAUUCGAAUUUUUGUAAGCCAGAAAUCAUUGAGCGAGUUGGCAACACUUGGUGG-CCAAAAGGAGACCGCCCUGGGGGAGUGGGGUGGCAC-----GGGG (((..(((((........((((((((((((.....)))))))..)))))(((((.(....))))))...)-))))..)))(.(((((((........))))))))..-----.... ( -33.10) >consensus _____________________AAAUUGCUGCAAACCAGAAAUCAUUGAGUGAGUUGGCAACACUCGGUGUCCCAAAAGGAGAUUCCUUGGUGGAAAUGAGGGGGUAGUUUUUUG_U ..........................(((((...((.....(((((.(.(((((.(....)))))).)...(((.((((.....))))..))).))))).)).)))))........ (-19.95 = -20.28 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:15 2006