Locus 3055

Sequence ID 2L_DroMel_CAF1
Location 8,719,565 – 8,719,661
Length 96
Max. P 0.878481
window4862

overview

Window 2

Location 8,719,565 – 8,719,661
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 90.71
Mean single sequence MFE -16.93
Consensus MFE -16.53
Energy contribution -16.53
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.98
SVM decision value 0.90
SVM RNA-class probability 0.878481
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8719565 96 + 22407834
UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGCUUCGCCAGCGACUUUAUUUCAUACCUCUUUAUUUAUUAAGGCUUUGUUU
.((((((((((((..(((........)))...(((........)))......))))))))))...........(((........)))))....... ( -16.80)
>DroSec_CAF1 32194 88 + 1
UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGGUUUGCCAGCGACUUUAUUUCUUACCUCUUUAUUUAUUAAGG--------
...((((((((((..(((........)))..((((........)))).....))))))))))...........(((((.....)))))-------- ( -17.30)
>DroSim_CAF1 32917 88 + 1
UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCCGCGGUUUGCCAGCGACUUUAUUCCAUACCUCUUUAUUUAUUAAGG--------
...((((((((((..(((........)))..((((........)))).....))))))))))...........(((((.....)))))-------- ( -16.70)
>consensus
UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGGUUUGCCAGCGACUUUAUUUCAUACCUCUUUAUUUAUUAAGG________
...((((((((((..(((........)))...(((........)))......))))))))))...........(((((.....)))))........ (-16.53 = -16.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:14 2006