| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,715,987 – 8,716,083 |
| Length | 96 |
| Max. P | 0.521709 |
| Location | 8,715,987 – 8,716,083 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.18 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -9.18 |
| Energy contribution | -11.30 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.48 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8715987 96 + 22407834 UAUAUUCAGAUGAUAUAUUUCCUG-----AAGGAACUUAAUGGGAAAACAGGCAGUAUAAUGAGUACACA---AAGUAUGCAGUUGCACAAAGUGUUAUCUUAA .......(((((((((.((((((.-----(((...)))...)))))).......(((...((.((((...---..)))).))..))).....)))))))))... ( -17.30) >DroSec_CAF1 28559 95 + 1 UAUAUUCAGAUGAUAUAUUACCUG-----AAGGAACUUAAUGGGC-AACAGGCAGUAUGAAUGGUACACA---GAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((....((..-----..)).......((.((-(((..(((.(((...((.....))---..)))))).))))).))..)))))))))... ( -21.30) >DroSim_CAF1 29268 79 + 1 UAUAUUCAGAUGAUAUAUUUCCUG-----AAGGAAAU-----------------GUACACAGAGUACACA---GAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((((((((..-----..))))))-----------------((((.....))))...---.....(((....)))....)))))))))... ( -18.10) >DroYak_CAF1 28822 88 + 1 UAUAUUCAGAUGAUAUAUUUCCUGUAAUGAAGGAACUUUGUGGGG-GAGAGACUGUAUAAAUAGUACACAAGUACGUAUGCAGAUGUAU--------------- ((((((.....))))))((((((.(.(..(((...)))..)).))-))))..(((((((....((((....)))).)))))))......--------------- ( -19.80) >consensus UAUAUUCAGAUGAUAUAUUUCCUG_____AAGGAACUUAAUGGG__AACAGGCAGUAUAAAGAGUACACA___AAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((..(((((.......)))))...................((((.....))))...........(((....)))....)))))))))... ( -9.18 = -11.30 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:12 2006