Locus 3051

Sequence ID 2L_DroMel_CAF1
Location 8,712,383 – 8,712,503
Length 120
Max. P 0.500000
window4856

overview

Window 6

Location 8,712,383 – 8,712,503
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -37.18
Consensus MFE -30.70
Energy contribution -31.32
Covariance contribution 0.61
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8712383 120 - 22407834
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAGAUCCUCAAUGAGCCUAUUUCGCAGCAGUGA
.(((((((((((........))))).(((.(.(((((....(((....)))(((((.((((((((((....))).))))))))))))..))))).).)))...........))))))... ( -41.80)
>DroVir_CAF1 32083 120 - 1
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAACGAGCCUAUUUCGCAUCAGUAU
..(((((((((.....((((.((.......))((((.....(((....)))(((((.((((((((((....))).))))))))))))...)))).......)))).....))))))))). ( -38.10)
>DroGri_CAF1 36476 120 - 1
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUAGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAAUGAGCCUAUUUCACAUCAGUGA
.(((((.(((((........))))).....((((.......)))).)))))...(((((((((((((....))).)))))))....(((((..(((...)))..))))))))........ ( -31.30)
>DroWil_CAF1 30619 120 - 1
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUAGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAAAUAUUAAACGAGCCUAUUUCGCAGCAGUAA
.(((((((((((........))))).....(((((((((((((...((((.....))))))))))).)))))).........................((((.....))))))))))... ( -33.40)
>DroMoj_CAF1 35536 120 - 1
UCUGCUGGUGCCAUCGAGGCGGCACACAUCGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCCUAUAAACCAAAUCAGAAUAUCCUGCACGAGCCUAUUUCGCAUCAGUAU
..(((((((((.....((((..........((((.......))))..(((((((((.(((((((...........))))))))))))......))))....)))).....))))))))). ( -39.50)
>DroPer_CAF1 34453 120 - 1
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAGAUACUGAACGAGCCUAUUUCACAGCAGUAC
.(((((((((((........))))).....((((.......)))).....(((.((.((((((((((....))).))))))).((((......)))))).)))........))))))... ( -39.00)
>consensus
UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAACGAGCCUAUUUCGCAGCAGUAA
..(((((.(((.....((((..........((((.......))))......(((((.((((((((((....))).))))))))))))..............)))).....))).))))). (-30.70 = -31.32 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:08 2006