| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,703,074 – 8,703,166 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 8,703,074 – 8,703,166 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.24 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -11.90 |
| Energy contribution | -13.02 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8703074 92 + 22407834 UCGUAUGUGACGCAAGGCACUUCUUGCAUUAUCUAACCAUGGAAAUUAAUGAAUGUCCAAAGCGGAUAUCAUAUAAAAAG-GCAGAACAAAUA ...(((((((.((((((....))))))..(((((.....((((.(((....))).))))....)))))))))))).....-............ ( -18.10) >DroSec_CAF1 15646 91 + 1 UCGUAUGUGACGCAAGGCACUUCUUGCACUAUCUA-CCAUGGAAAUUAAUGAAUGUCCAAAGUGGAUAUCAUAUAAGAAG-GCAGAACAAAUA ((.(((((((.((((((....))))))..((((((-(..((((.(((....))).))))..)))))))))))))).))..-............ ( -24.70) >DroSim_CAF1 16442 91 + 1 UCGUAUGUGACGCAAGGCACUUCUUGCAUUAUCUA-CCAUGGAAAUUAAUGAAUGUCCAAAGCGGAUAUCAUAUAGGAAG-GCAGAACAAAUA ((.(((((((.((((((....))))))..((((..-(..((((.(((....))).))))..)..))))))))))).))..-............ ( -23.20) >DroEre_CAF1 18202 90 + 1 UCGCAUGUGACGCAAGGCACUUCUUGCAUUAUCUA-CCAUGGAAAUUAAUGAAUGUCCAAAGCGGAUAUCAUAUAAAAAG-GCACAAUA-GUA ....((((((.((((((....))))))..((((..-(..((((.(((....))).))))..)..))))))))))......-........-... ( -18.70) >DroYak_CAF1 15979 80 + 1 UCGCAAGUGACGCAAGGUACUUCUUGAAUUAUCUA-CCAUGGAAAUUAAUGAAUGUUCCAAGCGGAUAUCAUAUAAGAUA------------U ((((..((((..(((((....)))))..))))...-...((((((((....))).))))).))))(((((......))))------------) ( -15.40) >DroAna_CAF1 14766 91 + 1 UCACAUGUGACGCAAGA-ACCACUUCCAUUAUCUU-CCAUGGAAAUGAAUGAAUGUCGGAAGCGGAUAUCACAAGAAUAGAACCUCACAAAAG .....((((((....).-.((.(((((..((((..-.(((....)))...).)))..))))).))...))))).................... ( -18.90) >consensus UCGCAUGUGACGCAAGGCACUUCUUGCAUUAUCUA_CCAUGGAAAUUAAUGAAUGUCCAAAGCGGAUAUCAUAUAAAAAG_GCAGAACAAAUA ...(((((((.((((((....))))))..(((((.....((((.(((....))).))))....)))))))))))).................. (-11.90 = -13.02 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:04 2006