Locus 3041

Sequence ID 2L_DroMel_CAF1
Location 8,673,440 – 8,673,559
Length 119
Max. P 0.763374
window4838

overview

Window 8

Location 8,673,440 – 8,673,559
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.22
Mean single sequence MFE -48.27
Consensus MFE -17.42
Energy contribution -19.57
Covariance contribution 2.14
Combinations/Pair 1.41
Mean z-score -1.93
Structure conservation index 0.36
SVM decision value 0.51
SVM RNA-class probability 0.763374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8673440 119 + 22407834
CAAUCGCCCAGUGAACGCUUUCUUGGGUAUACGGUAUGGCACGGUUGGAGGUGGCUUGGCGCGCUUCCAGGCGGCUCAACCGAUUGGAUAC-CAGGGACGAGUUAAUGCCACCGUCCAGA
(((((((((((.(((....)))))))))....(((..(((.((.(((((((((((...)).))))))))).)))))..)))))))).....-...(((((.((.......)))))))... ( -46.60)
>DroGri_CAF1 236 119 + 1
GGGUCGACCCAUCGAUGCUUAUUUGGGCAUACGUUAUGCUCAAGUGAACAGUGGCUUGGGACGCUUCCAGAAGGCCAGAGCUGUUCCUUAUGCAGG-UCGCAUCGAUGCCACCCAGAUGA
((((.(...((((((((((((((((((((((...)))))))))))))....((((((.(((....)))...))))))((.((((.......)))).-)))))))))))).))))...... ( -50.70)
>DroEre_CAF1 248 119 + 1
CAAUCGCCCGGUGAAUGCCUUCUUGGGUAUACGCUAUGGCACGGUUGGAGGCGGCUUGGCACGCUUCCAGGCAGCCCAACCAAUUGGAUAC-CAGGGACGGGUUAAUGCCAGCGCGCGGA
...((((.(((((.((((((....)))))).)))..(((((.(.(((((((((((...)).))))))))).)(((((..((...(((...)-)).))..)))))..))))).)).)))). ( -50.50)
>DroWil_CAF1 2111 119 + 1
CAAUCGUCCCAUAGAUGCUUAUCUGGGCAUCCGCUAUGCUCAGGUCGGCAGCGGACUCGGUCGCUUCCAACAGGCCAGAUCUGUGCCGUAU-CAGGGUCAAGUGAAUGCCACAAAGGCAA
.....(.(((...(((((..((((((((((.....)))))))))).((((.((((((.((((..........)))))).))))))))))))-).))).).......((((.....)))). ( -44.20)
>DroYak_CAF1 263 119 + 1
CAAUCGCCCGGUGAAUGCCUUCUUGGGCAUACGGUAUGGCACGGUUGGAGGCGGCUUGGCACGCUUCCAGGCGGCCCAACCGAUUGGAUAC-CAGGGACGGGUUAACGCCACCGUCCAGA
(((((((((((.(((....)))))))))....(((..(((.((.(((((((((((...)).))))))))).)))))..)))))))).....-...((((((..........))))))... ( -55.10)
>DroAna_CAF1 295 119 + 1
CAAUGGCCUGAUUAACGCUUUCCUUGGCAUCCGUUACGGCAAGGUGGGCAGUGGCUUGUCGCGCUUCCAGGCCGCCCAGCCCACUGGCUAC-CAGGGCAGAGUCAAUGCCAACGUUAAGA
...((((.(((((...(((((((.((((....)))).))...(((((.((((((((.(.((.(((....))))).).)).)))))).))))-))))))..)))))..))))......... ( -42.50)
>consensus
CAAUCGCCCGAUGAAUGCUUUCUUGGGCAUACGCUAUGGCAAGGUUGGAAGCGGCUUGGCACGCUUCCAGGCGGCCCAACCGAUUGGAUAC_CAGGGACGAGUUAAUGCCACCGUGCAGA
...((((((.....((((((....))))))...........(((((((..((.((((((.......)))))).)))))))))............))).)))................... (-17.42 = -19.57 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:51 2006