| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 874,772 – 874,873 |
| Length | 101 |
| Max. P | 0.730805 |
| Location | 874,772 – 874,873 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -12.56 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 874772 101 - 22407834 ACACACAUUUGUUGUGUUUAUGAUUGAUUGAUUAAGUUUACCCACAUUUCGAUAAUUAAUGAAAUGGGAGUCUCUCUACUGGAAU-AAGCACCGAAUAUAUA ......(((((..((((((((((((....))))........((((((((((........)))))))((((...))))..))).))-)))))))))))..... ( -16.80) >DroSec_CAF1 3150 85 - 1 ACACACACUUGUUGCGUUUCAGAUUGUUUA---------------AUUUCGAUAAUUAAGGAUUUAGGGGUC--CCUACUGAAAUUUAGCACCGAGUAUAUA ......(((((.((((((((((..(.((((---------------(((.....))))))).)..((((....--)))))))))))...))).)))))..... ( -20.80) >DroSim_CAF1 6055 82 - 1 AC--ACACUUGUUGCGUUUCAGAUUGUUUA---------------AUUUCGAUAAUUCAUGAAAUAGGGGUC--CCUACUGAAAU-AAGCACCGAGUAUAUA ..--..(((((.((((((((((((((....---------------....))))...........((((....--)))))))))))-..))).)))))..... ( -20.00) >consensus ACACACACUUGUUGCGUUUCAGAUUGUUUA_______________AUUUCGAUAAUUAAUGAAAUAGGGGUC__CCUACUGAAAU_AAGCACCGAGUAUAUA ......(((((.((((((((((((((.......................))))...........((((......)))))))))))...))).)))))..... (-12.56 = -11.90 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:32 2006