Locus 3038

Sequence ID 2L_DroMel_CAF1
Location 8,650,217 – 8,650,316
Length 99
Max. P 0.750646
window4835

overview

Window 5

Location 8,650,217 – 8,650,316
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 78.68
Mean single sequence MFE -19.79
Consensus MFE -14.40
Energy contribution -14.36
Covariance contribution -0.04
Combinations/Pair 1.07
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value 0.47
SVM RNA-class probability 0.750646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8650217 99 + 22407834
GCCAU-------UUUACAAUAGAAACGCACUGAAGUGCUGC----UCUCAGUGAAAAGAUGCCACACCAACCAAGCUUAUGCUUGGAAACAUUUUCC-CCAAACUACUUCU
....(-------(((((...(((...((((....))))...----)))..))))))..............((((((....))))))...........-............. ( -19.30)
>DroSec_CAF1 19173 103 + 1
GCCAU-------UUUACAAUAGAAACGCACUGAAGUGCUCUCGAAAAUCAGUGAAAAGAUGCCAUACCAACCAAGCUUAUGCUUGGAAAGAUUUUCC-CCAGACCACAUCU
((..(-------(((......)))).))...((.(((.(((.(((((((.(((.........))).....((((((....))))))...))))))).-..))).))).)). ( -21.90)
>DroSim_CAF1 19218 102 + 1
CCCAU-------CUUAAAAUAGAAACGCACUGAAGUGCUCU--AAAAUCAGUGAAAAGAUGCCAUACCAACCAAGCUUAUGUUUGGAAACAUUUUCCCCCAGACCACAACU
..(((-------(((............((((((..(.....--.)..))))))..)))))).........((((((....))))))......................... ( -16.64)
>DroEre_CAF1 21309 94 + 1
GACUU-------UUCACAAUGGAAACGCACUGAAGUGCUCUCGAAAAUCAAUGCAAAGAUGCCCCACCAACCAAGCUUAUGCUUGGACACAUUUCCA-GCAA---------
((.((-------(((.....(....)((((....))))....)))))))..(((...(......).....((((((....))))))...........-))).--------- ( -21.90)
>DroYak_CAF1 19664 110 + 1
GCCAUUUUCAUUUGCACAAUAGAAACGCACUGAAGUGCCCUCGAAAAUCAAUGACAAGAAGCCACAGCAGCCAAGCUUAUGUUUGGAAACAUUUUCU-UCAGACCACUUCU
((...((((............)))).))...((((((..((.(((....((((.......((....))..((((((....))))))...))))...)-))))..)))))). ( -19.20)
>consensus
GCCAU_______UUUACAAUAGAAACGCACUGAAGUGCUCUCGAAAAUCAGUGAAAAGAUGCCACACCAACCAAGCUUAUGCUUGGAAACAUUUUCC_CCAGACCACAUCU
.....................((((.((((....))))................................((((((....))))))......))))............... (-14.40 = -14.36 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006