| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,643,287 – 8,643,392 |
| Length | 105 |
| Max. P | 0.692407 |
| Location | 8,643,287 – 8,643,392 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.67 |
| Mean single sequence MFE | -13.13 |
| Consensus MFE | -12.07 |
| Energy contribution | -12.18 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8643287 105 + 22407834 GAAAUAUAUUACGAGUUUCGCCUUACAUUUGGCACACAAAAUGUAAAAGAUAAAACAUAGCUUAACAAAGCCAAAAUCAAACUUCUGCAGAAGAAAAAGUUUCAU (((((.......(((((((...((((((((........))))))))..))...)))...((((....)))).....))...((((....)))).....))))).. ( -15.50) >DroSec_CAF1 12034 90 + 1 ---------------UUUCGCCUUCAGUUCGGCACCCAAAAUGUAAAAGAUAAAACAUAGCUUGACAAAGCCAAAAUCAAACUUCAGCAGAAAAAAAAGUUUCAU ---------------(((((((........)))........(((..(((..........((((....))))..........)))..)))))))............ ( -11.15) >DroSim_CAF1 12520 90 + 1 ---------------UUUCGCCUUAAGUUCGGCACCCAAAAUGUAAAAGAUAAAACAUAGCUUGACAAAGCCAAAAUCAAACUUCUGCAGAAGAAAAAGUUUCAU ---------------(((((((........)))........((((.(((..........((((....))))..........))).))))...))))......... ( -12.75) >consensus _______________UUUCGCCUUAAGUUCGGCACCCAAAAUGUAAAAGAUAAAACAUAGCUUGACAAAGCCAAAAUCAAACUUCUGCAGAAGAAAAAGUUUCAU ...............(((((((........)))........((((.(((..........((((....))))..........))).))))))))............ (-12.07 = -12.18 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:45 2006