Locus 3035

Sequence ID 2L_DroMel_CAF1
Location 8,640,925 – 8,641,020
Length 95
Max. P 0.548708
window4831

overview

Window 1

Location 8,640,925 – 8,641,020
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -18.08
Consensus MFE -10.26
Energy contribution -10.48
Covariance contribution 0.22
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.57
SVM decision value 0.03
SVM RNA-class probability 0.548708
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8640925 95 - 22407834
AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGGAAUUGCAAGGCCAUU-AGGCCAAAGUGCUGGAAAGUUAACAAACAGAUCGA--
..((((....))))...((((..((............................((((...-.))))...(((((....)))..))...))..))))-- ( -17.00)
>DroPse_CAF1 19264 92 - 1
AACAGCAAAAGUUGAAAUCGAAAUGGAAAUGCGAAUGGA------AAUUGCAAGGCCAUCCAGGCCAAAGUGCUAAAAAGUUUAUAAAGACAUCCACA
..((((....)))).........((((..(((.(((...------.)))))).((((.....)))).............((((....)))).)))).. ( -18.80)
>DroEre_CAF1 12322 95 - 1
AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUU-UGGCCAAAGUACUGCCAAGUUAACGAACAGCACGG--
..........((((...(((..((....))...........(((....(((..((((...-.))))...)))...)))......))).))))....-- ( -15.50)
>DroYak_CAF1 10365 95 - 1
AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUU-UGGCCAAAGUGCUGCAAAGUUAACGAACAGCACGA--
.....(((...(((....)))..))).........((..(((....))).)).((((...-.))))...((((((....(....)...))))))..-- ( -20.30)
>DroAna_CAF1 8965 83 - 1
CAGAGCCA-AGUUGAAAUCAGAAUGGAAAUGGGAAUGGAAAUGGAAAUGGCAAGGCCAUC-GGGCCAAAGUGCUAAAAAGUUGUU-------------
((...(((-..(((....)))..)))...))................(((((.((((...-.))))....)))))..........------------- ( -18.10)
>DroPer_CAF1 19407 92 - 1
AACAGCAAAAGUUGAAAUCGAAAUGGAAAUGCGAAUGGA------AAUUGCAAGGCCAUCCAGGCCAAAGUGCUAAAAAGUUUAUAAAGACAUCCACA
..((((....)))).........((((..(((.(((...------.)))))).((((.....)))).............((((....)))).)))).. ( -18.80)
>consensus
AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUC_AGGCCAAAGUGCUAAAAAGUUAACAAACAGAUCGA__
.....(((...(((....)))..))).......................(((.((((.....))))....)))......................... (-10.26 = -10.48 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:44 2006