Locus 3034

Sequence ID 2L_DroMel_CAF1
Location 8,638,608 – 8,638,702
Length 94
Max. P 0.570770
window4830

overview

Window 0

Location 8,638,608 – 8,638,702
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.02
Mean single sequence MFE -21.59
Consensus MFE -13.61
Energy contribution -14.17
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.570770
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8638608 94 - 22407834
CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACA------------CAUUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
(((...(((((..(((((...........)))))............------------.....(((((...(((.....))).)))))))))).)))......... ( -23.70)
>DroPse_CAF1 16969 94 - 1
CACUUUAACGCAAUGCUUAACACACAUAGGCGCACACAGAC------------ACACAGACUAACGCAAUGUGCAACAACCAAUGCAACGUUUUGUGAAAAUGUCG
.........((...(((((.......))))))).....(((------------(((((((...(((.....((((........)))).)))))))))....)))). ( -15.90)
>DroSec_CAF1 7423 102 - 1
CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACACAC----ACGCACAUUUUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
(((...(((((..(((((...........)))))...............----..........(((((...(((.....))).)))))))))).)))......... ( -23.60)
>DroSim_CAF1 7538 106 - 1
CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACACACACAUACGCACAUUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
(((...(((((..(((((...........))))).............................(((((...(((.....))).)))))))))).)))......... ( -23.70)
>DroEre_CAF1 10074 88 - 1
CACUGUAGCGCAUUGCUUAACACACAUAGGAA------CACACACA------------CACUAGCGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
(((....(((((((((((........(((...------........------------..)))((((...))))...)))))))))..))....)))......... ( -20.52)
>DroYak_CAF1 8016 94 - 1
CACUUUAGAGCAUUGCUUAACACACAUAGGCUCACAUGCACACACA------------CACAGCUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
.......((((((.(((((.......)))))....)))).....((------------((..((((((...(((.....))).))).)))...))))......)). ( -22.10)
>consensus
CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACA____________CACUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG
(((...(((((....((((.......))))...................................(((...(((.....))).)))..))))).)))......... (-13.61 = -14.17 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:43 2006