| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,628,793 – 8,628,895 |
| Length | 102 |
| Max. P | 0.624266 |
| Location | 8,628,793 – 8,628,895 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 91.91 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -17.49 |
| Energy contribution | -18.88 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8628793 102 + 22407834 UCUAUUUUUUAGCUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGGAAUUUCUCGC---UCUUUUCCGGUUCCACUUUUCCCUCUA ((((...((((.((((.(.(((((.....))))).))))).))))...))))....(((...(((((........---....)))))...)))............ ( -23.50) >DroSec_CAF1 57018 102 + 1 UCUAUUUUUUAGCUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGGAAUUUCUCGC---UCUUUUCCGGUUCCACUUUUCCCUCUA ((((...((((.((((.(.(((((.....))))).))))).))))...))))....(((...(((((........---....)))))...)))............ ( -23.50) >DroSim_CAF1 63368 102 + 1 UCUAUUUUUUAGAUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGAAAUUUCUCGC---UCUUUUCCGGUUCCACUUUUCCCUCUA ((((...((((..(((.(.(((((.....))))).))))..))))...))))...((((..((((......))))---......))))................. ( -17.80) >DroEre_CAF1 58293 102 + 1 UCUAUUUUUUAGCUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGGAAUUUCUCGC---UCUUUUCCGCUUCCACUUUUCCCUCUA ((((...((((.((((.(.(((((.....))))).))))).))))...))))....(((..((((((........---....))))))..)))............ ( -27.60) >DroYak_CAF1 59983 102 + 1 UCCUUUUUUUAGCUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGGAAUUUCUCGC---UCUUUUCCGCUUCCAUUUUUCCCUCUA .......((((.((((.(.(((((.....))))).))))).)))).....((....(((..((((((........---....))))))..)))....))...... ( -24.90) >DroAna_CAF1 60289 101 + 1 ----UUUUUGAGUUUGCAGUUUGCUUUUCGCAAAGUCAAGGUAAAUAUUACAUUUUUGGUUGCGGAAUUUUUCGCCUCCCCCUUCCGGUUCCACUUUGUAGUCUA ----.((((((.(((((............))))).)))))).....((((((....(((...(((((...............)))))...)))...))))))... ( -19.76) >consensus UCUAUUUUUUAGCUUGCAGUUUGCUUUUUGCAAAGUCAAGGUAAAUAUUAGAUUUUUGGUUGCGGAAUUUCUCGC___UCUUUUCCGGUUCCACUUUUCCCUCUA ((((...((((.((((.(.(((((.....))))).))))).))))...))))....(((...(((((...............)))))...)))............ (-17.49 = -18.88 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006