Locus 3028

Sequence ID 2L_DroMel_CAF1
Location 8,626,795 – 8,626,892
Length 97
Max. P 0.983218
window4818

overview

Window 8

Location 8,626,795 – 8,626,892
Length 97
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 72.74
Mean single sequence MFE -14.06
Consensus MFE -3.42
Energy contribution -4.22
Covariance contribution 0.80
Combinations/Pair 1.12
Mean z-score -2.27
Structure conservation index 0.24
SVM decision value 1.94
SVM RNA-class probability 0.983218
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8626795 97 - 22407834
CAUACAU-CUC--ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUAAACAAAAUAAUUCAAAAUUGUCUUGUUUGAUGUAACAGCAAA
..(((((-(..--..........((((((((.((.((....)).)).))))))))..((((((.(((((.....))))).))))))))))))........ ( -16.30)
>DroSec_CAF1 55014 84 - 1
CACACAU-CUC--ACGUUACCAAUUAAUUGAGUUCACAGCAGUCAACUCAAUU-------------AAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAC
.......-...--..(((((.(((((((((((((.((....)).)))))))))-------------)))).(((((......)))))..)))))...... ( -17.90)
>DroSim_CAF1 61339 97 - 1
CACACAU-CUC--ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUAUCCAAAAUAAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAA
.......-...--..(((((...((((((((.((.((....)).)).))))))))......(((((((..((....))..)))))))..)))))...... ( -12.50)
>DroEre_CAF1 56174 100 - 1
CAACCAUCAUCAUGAUUGAUCAAAUGAUUGAUUUCACAGCAGUCCUCCCAAUUAGCUAUCUAAAAUAAUUCAAAAUAACCUUGUUUUAUUUAACAGUCAA
............((((((.......(((((.........)))))..................((((((..(((.......)))..))))))..)))))). ( -11.60)
>DroYak_CAF1 57833 73 - 1
CAUACAU-AUC--GGGUUACCAAUUGAUUGAUUUCCUAGUAGUCACCUCAAUUAGC------------------------UUGUUUUAGGUAACAGCCAA
.......-...--((((((((((((((.(((((.......)))))..))))))...------------------------........))))))..)).. ( -12.00)
>consensus
CACACAU_CUC__ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUA___AAAAUAAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAA
........................(((((((.((.((....)).)).)))))))..........................(((((......))))).... ( -3.42 =  -4.22 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:32 2006