Locus 3027

Sequence ID 2L_DroMel_CAF1
Location 8,625,036 – 8,625,139
Length 103
Max. P 0.757975
window4817

overview

Window 7

Location 8,625,036 – 8,625,139
Length 103
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 65.44
Mean single sequence MFE -14.46
Consensus MFE -7.29
Energy contribution -6.98
Covariance contribution -0.31
Combinations/Pair 1.29
Mean z-score -1.58
Structure conservation index 0.50
SVM decision value 0.49
SVM RNA-class probability 0.757975
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8625036 103 + 22407834
--CUUAAUAUU-----UA--UAUUAUUAUAGUCAGUUAAUAUUAUUUUUUAGCUAUUACUCACAA-----CCUAGCUACUUUUGCUAUACCGGCAAUACCAACACUACCUCAGUGUC
--..(((((..-----..--...)))))..(((((((((.........))))))...........-----..((((.......))))....))).......(((((.....))))). ( -12.30)
>DroSec_CAF1 53348 110 + 1
--CUUAAUAAUGUUUUUAUUUAUUAUUAUAGUAAGCAAAUAUUAUUUUUUAGCUAUUAUUUACAA-----CCUAGCUACUUUUGCUACACCGACAAUACCAACACUGUCACUGUGUC
--...(((((((........)))))))(((((.((((((..........((((((..........-----..))))))..)))))).....((((..........)))))))))... ( -15.20)
>DroEre_CAF1 54471 94 + 1
--CUCAAUAAU---------------UCAAGUAUGUUUAUACUACUUUGUAGCA-UUUUUUCCAAGCUACUUUAGCUACUUUUGCUAUAACUG-----GCAACACUGUCACUGUGUC
--.........---------------...(((((....)))))...((((((((-.........(((((...))))).....)))))))).((-----(((....)))))....... ( -14.54)
>DroYak_CAF1 56248 90 + 1
CCGUGAAUAAU---------------U------AGUUGAUAAUAUACUUUAGCU-UUUUUUACAA-----CUCAGCUACUUUUGCUGUAGCAGAUAUACCAACACUGACACUGUGUC
..(((((....---------------.------((((((.........))))))-...)))))..-----....(((((.......)))))..........((((.......)))). ( -15.80)
>consensus
__CUUAAUAAU_______________UAUAGUAAGUUAAUAUUAUUUUUUAGCU_UUAUUUACAA_____CCUAGCUACUUUUGCUAUACCGGCAAUACCAACACUGUCACUGUGUC
.................................((((((.........))))))..................((((.......))))..............((((.......)))). ( -7.29 =  -6.98 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:31 2006