Locus 3026

Sequence ID 2L_DroMel_CAF1
Location 8,622,625 – 8,622,734
Length 109
Max. P 0.899336
window4816

overview

Window 6

Location 8,622,625 – 8,622,734
Length 109
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 90.24
Mean single sequence MFE -30.11
Consensus MFE -26.25
Energy contribution -26.36
Covariance contribution 0.11
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.87
SVM decision value 1.01
SVM RNA-class probability 0.899336
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8622625 109 + 22407834
-------GAACCACCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGUCGGAAAA
-------...((..((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))..)).... ( -31.51)
>DroSec_CAF1 50832 109 + 1
-------GAACCAACCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUAAAAA
-------.......((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))........ ( -28.91)
>DroSim_CAF1 56500 109 + 1
-------GAACCAACCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA
-------....((.((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))..)).... ( -29.21)
>DroEre_CAF1 52315 109 + 1
-------GAACCACCCAUUCGGCACUUAAGACAUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA
-------....(((((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))).)).... ( -32.31)
>DroYak_CAF1 53764 109 + 1
-------GAACCAUCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA
-------....(((((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))).)).... ( -29.71)
>DroAna_CAF1 54168 115 + 1
ACAGCCGGCAGGACCCACACCCCGCUUAAGACUCUCGGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCAGAGGAAGUUGAA-CCGACAAAGCGCUGAGCAGGCAAGAAA
...(((.((.((........))(((((.......((((((((.((.((....(((((.........)))))..)).)).)))))))).-......)))))....)).)))...... ( -29.04)
>consensus
_______GAACCACCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA
..............((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))........ (-26.25 = -26.36 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:30 2006