Locus 3025

Sequence ID 2L_DroMel_CAF1
Location 8,621,603 – 8,621,698
Length 95
Max. P 0.900372
window4815

overview

Window 5

Location 8,621,603 – 8,621,698
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 98.95
Mean single sequence MFE -19.74
Consensus MFE -19.50
Energy contribution -19.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.99
SVM decision value 1.01
SVM RNA-class probability 0.900372
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8621603 95 + 22407834
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA
............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90)
>DroSec_CAF1 49832 95 + 1
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA
............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90)
>DroSim_CAF1 55494 95 + 1
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA
............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90)
>DroEre_CAF1 51361 95 + 1
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCAAAA
............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... ( -19.50)
>DroYak_CAF1 52766 95 + 1
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAAUUGCAAAA
............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... ( -19.50)
>consensus
GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA
............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... (-19.50 = -19.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:29 2006