Locus 3021

Sequence ID 2L_DroMel_CAF1
Location 8,617,325 – 8,617,417
Length 92
Max. P 0.782112
window4807

overview

Window 7

Location 8,617,325 – 8,617,417
Length 92
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -21.12
Consensus MFE -13.18
Energy contribution -13.35
Covariance contribution 0.17
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.62
SVM decision value 0.56
SVM RNA-class probability 0.782112
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8617325 92 - 22407834
CCAGAGCCAGAGCAGCUUGUUAUUAUUAUUUUUUGCCUUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCAAC------------CCCACCCCC--------GCA
...........((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -21.30)
>DroSec_CAF1 45624 91 - 1
CCCGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCACC------------CACACCCCC--------GCA
.........-.((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -20.10)
>DroSim_CAF1 51310 91 - 1
CCCGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCACC------------CACACCCCC--------GCA
.........-.((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -20.10)
>DroEre_CAF1 47255 111 - 1
CCAGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCUUCAAUGGUAAAAGUUGUAGUAGCAAACAACAAUUUCU-----CCAAAACCACCAACACCCCCACCCACAACCCUCAGCC
...((((..-....))))((((((((...((((((((......))))))))..))))))))..............-----..................................... ( -18.10)
>DroYak_CAF1 48560 96 - 1
CCGGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGUAAAAGUUGUAGUAGGAAACAACAAUUUCU-----CCACCACC-------CCCCAACCCAC--------CCA
..((((...-.(((((((.((((((((.............))))))))))))))).((.(....).)).....))-----))......-------...........--------... ( -17.42)
>DroAna_CAF1 48641 94 - 1
CCGCUGCGA-GGCAGCUUGUUAUUAUUAUUUUUUCCCUUCAAUGGCAAAAGUUGUAGCAGGAAACAACAAUUUCUGGGCUGCAGC------------AGCACCAC----------CA
..(((((..-.((((((((((((....((((((..((......)).)))))).))))).(....)..........))))))).))------------))).....----------.. ( -29.70)
>consensus
CCAGAGCCA_AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU_____GCACC____________CCCACCCCC________GCA
.....((....)).(.(((((.(((((((((((((((......))))))))..)))))))..))))))................................................. (-13.18 = -13.35 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:22 2006