| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,616,228 – 8,616,330 |
| Length | 102 |
| Max. P | 0.643544 |
| Location | 8,616,228 – 8,616,330 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.20 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -18.54 |
| Energy contribution | -17.93 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8616228 102 + 22407834 UCUUGUUG----GCAUUCGUGUAUCGUGCAACUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGAAUGGGUG-UUGG---CUGGAUGGUUGAUGGUUG (((.((..----((((((((....(((........)))(((((((((..((...........))..)))))))))..)))))))-)..)---).)))............. ( -33.30) >DroSec_CAF1 44515 88 + 1 UCUUGUUG----GCAUUCGUGUAUCGUGCAAAUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGGAUGGGUG------------------GCUGGUUG .....(..----((((((((.(..(((........)))(((((((((..((...........))..)))))))))).)))))).------------------))..)... ( -25.80) >DroSim_CAF1 50218 88 + 1 UCUUGUUG----GCAUUCGUGUAUCGUGCAACUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGCAUGGGUG------------------GAUGCUUG .......(----(((((((....((((((..(.....)(((((((((..((...........))..))))))))))))))).))------------------)))))).. ( -29.50) >DroEre_CAF1 46289 91 + 1 UCUUGUUG----GCGUUCGUGUAUCGUGCAACUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGUAUGGGUCGUUGGAUGGUG--------------- (((...((----((((.((.....)).))..(((.((.(((((((((..((...........))..))))))))))).)))))))..))).....--------------- ( -26.70) >DroYak_CAF1 47376 110 + 1 UCUUGUUGGCUGGCAUUCGUGUAUCGUGCAACUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGGAUGGGUUGCUGGAUGUUGAAUGGUGGAUGGUGG ..(..((..(((.((((((...(((..((((((...(.(((((((((..((...........))..))))))))).)...))))))..)))..)))))).)))..))..) ( -37.70) >DroAna_CAF1 44855 85 + 1 UCUUGUUU----ACAUCAGCGUAACUCGUAACUGAACUCACUCUCAUUGUUAUCGAAUUGGAAAUGGUGCGGGUGGC-UGGCUG------------------G--GGUUG ........----.(((((((.....(((....)))...(((((.(((..((.((......))))..))).)))))))-))).))------------------.--..... ( -18.50) >consensus UCUUGUUG____GCAUUCGUGUAUCGUGCAACUAAACGCACCCGCAUUGUUAUCGGAUUGCAAAUGAUGUGGGUGGCAUGGGUG__________________GAUGGUUG ....(((.....(((..((.....))))).....))).(((((((((..((...........))..)))))))))................................... (-18.54 = -17.93 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:18 2006