Locus 3016

Sequence ID 2L_DroMel_CAF1
Location 8,612,673 – 8,612,774
Length 101
Max. P 0.634630
window4800

overview

Window 0

Location 8,612,673 – 8,612,774
Length 101
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 91.99
Mean single sequence MFE -20.95
Consensus MFE -18.75
Energy contribution -18.78
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value 0.21
SVM RNA-class probability 0.634630
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8612673 101 + 22407834
UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC
.(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20)
>DroSec_CAF1 40949 101 + 1
UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC
.(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20)
>DroSim_CAF1 46669 101 + 1
UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCCCCACGCU----GUUGUGC
.(((.((.....(((....)))...(((.....)))((((((((.........((((((.....)))))).))))))))........)).))).----....... ( -20.10)
>DroEre_CAF1 42704 105 + 1
UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCUGUCUGUUGUGC
.(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).)))............ ( -21.20)
>DroYak_CAF1 43602 101 + 1
UGCGAGGACUUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC
.(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20)
>DroAna_CAF1 41552 88 + 1
GGAGAGGAC-------------UCUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCGCCACAUU----GUUGUGC
((.(((((.-------------...(((.....)))((((((((.........((((((.....)))))).)))))))).))).)).))(((..----..))).. ( -20.80)
>consensus
UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU____GUUGUGC
.(((.((..................(((.....)))((((((((.........((((((.....)))))).))))))))........)).)))............ (-18.75 = -18.78 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:15 2006