Locus 301

Sequence ID 2L_DroMel_CAF1
Location 871,399 – 871,494
Length 95
Max. P 0.735615
window481

overview

Window 1

Location 871,399 – 871,494
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 93.03
Mean single sequence MFE -35.37
Consensus MFE -26.87
Energy contribution -27.43
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -3.01
Structure conservation index 0.76
SVM decision value 0.44
SVM RNA-class probability 0.735615
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 871399 95 - 22407834
AGGUGUGACCAUACGC-AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCACCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA
........((((((.(-((((.....(((.(((((((...(..(....)..).))))))).)))...)))))))))))((((((....)))))).. ( -36.40)
>DroSec_CAF1 8843 95 - 1
AGGUGUGACCAUACGC-AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCAGCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA
........((((((.(-((((((..((((..((......))..))))..)))((((.....))))...))))))))))((((((....)))))).. ( -38.40)
>DroYak_CAF1 9065 94 - 1
AGGUAUGACCAUACGCGAACGUGUG--CGUGUGUUGGAUCGUGCGUGUGUGUAGCGACGCUUACUUUUGUUGGUAUGCGUGUCUUAAUAGAUACUA
..(((((((((((((((........--)))))).))).))))))....(((((.(((((........))))).)))))((((((....)))))).. ( -31.30)
>consensus
AGGUGUGACCAUACGC_AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCAGCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA
........((((((......(..((((((..((......))..))))))..)..(((((........)))))))))))((((((....)))))).. (-26.87 = -27.43 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006