Locus 3006

Sequence ID 2L_DroMel_CAF1
Location 8,580,869 – 8,580,966
Length 97
Max. P 0.930250
window4783

overview

Window 3

Location 8,580,869 – 8,580,966
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.08
Mean single sequence MFE -24.32
Consensus MFE -13.21
Energy contribution -13.80
Covariance contribution 0.59
Combinations/Pair 1.36
Mean z-score -2.03
Structure conservation index 0.54
SVM decision value 1.20
SVM RNA-class probability 0.930250
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8580869 97 - 22407834
CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA
.......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80)
>DroPse_CAF1 32731 101 - 1
CCUAAAACACUUGCCACUUGCCUUCGUGUGUGGCAGUUUCGUUUACAUUUCACC-AACAUUUUCAGAAAUA-CCAAAGUCUUCAUCGAUGGUUACUGCGGAUA
....((((..(((((((.(((....))).)))))))....))))..........-...(((..(((....(-(((..(.......)..))))..)))..))). ( -17.10)
>DroSec_CAF1 16415 97 - 1
CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA
.......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80)
>DroSim_CAF1 21857 97 - 1
CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA
.......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80)
>DroEre_CAF1 17022 97 - 1
CCCAAAACAGCAACCAAUUUUCU--GUGUAAGAGAGUACAAUCGACAUUUGGCAUUUCAUU-UAGACUUGAGCACAAG---UCGAUGAUGGUUACUGAAGAUA
.......(((.((((((((((((--.....)))))))...((((((..(((((...(((..-......))))).))))---)))))..))))).)))...... ( -23.80)
>DroAna_CAF1 16781 97 - 1
GCCA-AACAAUGAGGCAGCUCCA--UUGUAGGGAGAAGCAAUCCACAUUUAGCUUUUCAUUUUCAACUUCAGCAAAAG---UCGAUGAUGGUUACUGUGAAAA
.((.-.((((((((....)).))--))))..))..........((((..(((((..(((((....((((......)))---).))))).))))).)))).... ( -18.60)
>consensus
CCCAGAACAGUAACCAAUUUUCU__GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU_UAAACUUGAGCAGAAG___UCGAUGAUGGUUACUGAAGAUA
.......(((((((((((((((.........))))))...(((((..(((.((..................)).)))....)))))..)))))))))...... (-13.21 = -13.80 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006