| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 870,999 – 871,091 |
| Length | 92 |
| Max. P | 0.952631 |
| Location | 870,999 – 871,091 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.72 |
| Mean single sequence MFE | -30.93 |
| Consensus MFE | -27.51 |
| Energy contribution | -27.63 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 870999 92 + 22407834 U---AAUAUAUAAUUUUCGGUUUUCUGAGAGUGGACAGCCUUCAGGGCUGCACUGGCUUAUCGAUUACCGAUAGCCGCGAGCACACGUCCGAAUU .---........((((((((....))))))))((((((((.....))))((.((((((.((((.....))))))))).).))....))))..... ( -31.20) >DroSec_CAF1 8444 92 + 1 U---AAUAUUUCAUUUUCGGUUUUCUGAGAGUGGACAGCCUUCAGGGCUGCAUUGGCAUAUCGAUUACCGAUAGCCGAGAGCACACGUCUGCAUU .---.....(((((((((((....)))))))))))(((((.....)))))..(((((.(((((.....))))))))))..(((......)))... ( -32.40) >DroYak_CAF1 8670 95 + 1 UACAAAUAUUUUAUUUUCGGUUUUGAGAGAGUGGACAGUCCUCAGGGCUGCACUGGCUUAUCGAUUACCGAUAGCCGCGAGCACACGUCCGCAUU ..............((((........))))(((((((((((...)))))((.((((((.((((.....))))))))).).))....))))))... ( -29.20) >consensus U___AAUAUUUAAUUUUCGGUUUUCUGAGAGUGGACAGCCUUCAGGGCUGCACUGGCUUAUCGAUUACCGAUAGCCGCGAGCACACGUCCGCAUU ..............((((((....))))))(((((((((((...)))))((.(((((.(((((.....))))))))).).))....))))))... (-27.51 = -27.63 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006