Locus 3

Sequence ID 2L_DroMel_CAF1
Location 14,897 – 14,989
Length 92
Max. P 0.517590
window3

overview

Window 3

Location 14,897 – 14,989
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 81.01
Mean single sequence MFE -17.63
Consensus MFE -13.83
Energy contribution -13.91
Covariance contribution 0.09
Combinations/Pair 1.14
Mean z-score -1.11
Structure conservation index 0.78
SVM decision value -0.03
SVM RNA-class probability 0.517590
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14897 92 + 22407834
ACAUCUAAAAAACUUUGUGUUUAAGUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUUUUGCAUGGAUCAGGUCCAUAAGGC
..........(((((.......)))))................(((((((.((....(((((((((....)))))))))..)).)).))))) ( -18.90)
>DroVir_CAF1 2583 81 + 1
ACUUUGAAAAAACCAA-----------GAGCUUACCUCCGCUUGCCCUUAUAAAGCCGAUUAAUACUUUUGCAUGGAUCUGGUCCAUAGGGA
................-----------((((........)))).((((......((.((........)).))((((((...)))))))))). ( -13.90)
>DroSec_CAF1 3091 92 + 1
ACACCUAAAAAACUUUUAGUUUAGUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC
...(((...(((((........))))).(((..((((..((((((....))).))).(((((((((....)))))))))))))..)))))). ( -19.20)
>DroSim_CAF1 3101 92 + 1
ACACCUAAAAAACUUUUAGUUUAGUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC
...(((...(((((........))))).(((..((((..((((((....))).))).(((((((((....)))))))))))))..)))))). ( -19.20)
>DroEre_CAF1 3547 92 + 1
AUAUCCAAAAAGCGUUCUCUUUAAUUAAUAUUAACCUUCUCUUGCCUUUAUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC
...........................................(((((...((....(((((((((....)))))))))..))....))))) ( -15.90)
>DroYak_CAF1 2792 92 + 1
ACAUCGAAAAAGUUAACAUCUUAAUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGGUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC
....((((...(((((.((........)).))))).))))...(((((((.((....(((((((((....)))))))))..)).)).))))) ( -18.70)
>consensus
ACAUCUAAAAAACUUUCAGUUUAAUUUAUAUUAACCUUCGCUUGCCUUUGUACAGUCGAUUUAUGCUCUUGCAUGGAUCAGGUCCAUAAGGC
...........................................(((((.........(((((((((....)))))))))........))))) (-13.83 = -13.91 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:22:58 2006