Locus 2996

Sequence ID 2L_DroMel_CAF1
Location 8,555,831 – 8,555,923
Length 92
Max. P 0.950341
window4765

overview

Window 5

Location 8,555,831 – 8,555,923
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 86.62
Mean single sequence MFE -12.48
Consensus MFE -10.10
Energy contribution -10.34
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.81
SVM decision value 1.40
SVM RNA-class probability 0.950341
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8555831 92 - 22407834
--------UCCCCUCUCUAUUCCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC
--------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70)
>DroSec_CAF1 65422 92 - 1
--------CCCUCUUUCUAUACCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC
--------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70)
>DroSim_CAF1 66340 92 - 1
--------CCCUCUCUCUAUACUCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC
--------.................---(((((....((((((.....((((((((...((((.....))))..)))))))).......))))))))).)).. ( -14.70)
>DroWil_CAF1 53521 91 - 1
----------CUCUCUUUGUCCUCUCUCCCUUUUAACACUCUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUA--CGCUU
----------........((((...........................(((((((...((((.....))))..)))))))(((.....))))).)--).... (  -6.90)
>DroYak_CAF1 66592 100 - 1
CUCUCCCGCUCUCUCUCUAUUCCCU---GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGCUGUACGCUU
.........................---((.((..(((.((((.....((((((((...((((.....))))..)))))))).......)))).))))))).. ( -11.40)
>consensus
________CCCUCUCUCUAUACCCU___GCUGUUAACACCGUUUUUUUUAUUGCAUCAUAAAUUUAAUAUUUUUAUGUAAUGUUUGUAUAACGGUACACGCUC
.....................................((((((.....((((((((...((((.....))))..)))))))).......))))))........ (-10.10 = -10.34 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:41 2006