Locus 2993

Sequence ID 2L_DroMel_CAF1
Location 8,552,064 – 8,552,158
Length 94
Max. P 0.569480
window4760

overview

Window 0

Location 8,552,064 – 8,552,158
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 98.58
Mean single sequence MFE -26.02
Consensus MFE -24.95
Energy contribution -24.82
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -0.78
Structure conservation index 0.96
SVM decision value 0.07
SVM RNA-class probability 0.569480
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8552064 94 - 22407834
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60)
>DroSec_CAF1 61616 94 - 1
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60)
>DroSim_CAF1 62418 94 - 1
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60)
>DroEre_CAF1 63145 94 - 1
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60)
>DroYak_CAF1 62779 94 - 1
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))..)))((((........)))).... ( -25.60)
>DroAna_CAF1 46686 94 - 1
CCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGCCGUUGCACUUUUAAUGUUUUCCCGGCAACAUCUGGCCAGGAC
((((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))...)))(((........))).)).. ( -28.10)
>consensus
GCGGGGCAGUCAAGUGCUGCGAAAUGUGAAAAAGUAAAUAAGUUUUCGCCGGCGUUGCACUUUUAAUGUUUUCCUGGCAACAUCUGGCCAAGAC
..((((((...((((((.(((....(((((((..(....)..)))))))...))).))))))....)))...)))(((........)))..... (-24.95 = -24.82 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:37 2006