Locus 2990

Sequence ID 2L_DroMel_CAF1
Location 8,543,371 – 8,543,491
Length 120
Max. P 0.723496
window4754

overview

Window 4

Location 8,543,371 – 8,543,491
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.30
Mean single sequence MFE -26.48
Consensus MFE -22.99
Energy contribution -23.79
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.87
SVM decision value 0.41
SVM RNA-class probability 0.723496
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8543371 120 + 22407834
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUUGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGUAGAAACGCUGCA
................((.(((((((...)))))))..(((.(((((((..((...((((..(............................)..))))..))))))).)).)))...)). ( -24.89)
>DroSec_CAF1 52731 116 + 1
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUAGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAC----AAACAAAAAUAUUGGAUAAAUCGCCGGAAAAAACGCAGCA
......................(((((.(((((.....)))))((((((..((...((((..(.............----...........)..))))..))))))))......))))). ( -27.16)
>DroSim_CAF1 52147 116 + 1
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGUAGUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAU----AAACAAAAAUAUUGGAUAAAUCGCCGGAAAAAACGCAGCA
......................(((((.(((((.....)))))((((((..((...((((..(.............----...........)..))))..))))))))......))))). ( -27.16)
>DroEre_CAF1 54205 116 + 1
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCG---UUGCUCCGGUUGGAAAAUAUCUGAGAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA-AAACGCAGCA
....................((((((...))))(((---((..((((((..((...((((..(............................)..))))..)))))))).-.))))).)). ( -26.99)
>DroYak_CAF1 53692 116 + 1
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCG---UUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA-AAACGCAGCA
....................((((((...))))(((---((..((((((..((...((((..(............................)..))))..)))))))).-.))))).)). ( -26.19)
>consensus
CAUUCGAAAAUUUAACGCCCGCGCUGCUGCAGCGCGU_GUUGCUCCGGUUGGAAAAUAUCUGAAAACAGCAUUAAUAAAUAAACAAAAAUAUUGGAUAAAUCGCCGGAA_AAACGCAGCA
...................(((((((...)))))))..(((((((((((..((...((((..(............................)..))))..))))))))......))))). (-22.99 = -23.79 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:31 2006