Locus 299

Sequence ID 2L_DroMel_CAF1
Location 865,895 – 865,985
Length 90
Max. P 0.726137
window479

overview

Window 9

Location 865,895 – 865,985
Length 90
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -34.58
Consensus MFE -21.66
Energy contribution -24.34
Covariance contribution 2.69
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.63
SVM decision value 0.41
SVM RNA-class probability 0.726137
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 865895 90 + 22407834
AACAACUUUUCCGCUGUUUUAGGCUGGGCUCAGACGCCGACUGCGACGCG------------------GGCAGCGGUGUCGCAUACCUAUCUACACUAAGCAAAAAUC
............(((....((((.((((....(((((((.((((......------------------.))))))))))).....)))))))).....)))....... ( -28.50)
>DroSec_CAF1 3323 108 + 1
AACAACUUUUCCGCUGUUUUAGGCUGGGCUCAGACGCCGACUGCGACGCAGACUGCGCAGUUGCCGCUGGCAGCGGUGUCGCAUACCUAUCUACACUAAGCAAACAUC
............(((....((((.((((....(((((((.((((..(((.....)))((((....))))))))))))))).....)))))))).....)))....... ( -35.50)
>DroEre_CAF1 3433 96 + 1
AACAACUUUUCCGCUGUUUUAGGCUGGGCUCAGACGCCGA------------CUGCGCAGUCGGCGCUGGCAGCAGCGUCGCAUGCCUAUCUACACUAAGCAAAAUUC
............(((....((((.(((((...((((((((------------((....)))))))((((....)))))))....))))))))).....)))....... ( -36.50)
>DroYak_CAF1 3370 108 + 1
AACAACUUUUCCGCUGUUUUAGGCUGGGCUCAGACGCCGACCGCGACGCAGACUGCGCAGUCAACGGUGGCUGCGGCGUCGCAUGCCUAUCUACACUAAACAAAAAUC
..............(((..(((((..(((......)))....(((((((......((((((((....)))))))))))))))..)))))...)))............. ( -37.80)
>consensus
AACAACUUUUCCGCUGUUUUAGGCUGGGCUCAGACGCCGACUGCGACGCA__CUGCGCAGUCG_CGCUGGCAGCGGCGUCGCAUACCUAUCUACACUAAGCAAAAAUC
............(((....((((.(((((...(((((((.((((......((((....)))).......)))))))))))....))))))))).....)))....... (-21.66 = -24.34 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:26 2006