Locus 2989

Sequence ID 2L_DroMel_CAF1
Location 8,542,799 – 8,542,917
Length 118
Max. P 0.804769
window4753

overview

Window 3

Location 8,542,799 – 8,542,917
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 76.22
Mean single sequence MFE -27.78
Consensus MFE -12.58
Energy contribution -13.02
Covariance contribution 0.44
Combinations/Pair 1.21
Mean z-score -1.99
Structure conservation index 0.45
SVM decision value 0.63
SVM RNA-class probability 0.804769
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8542799 118 + 22407834
UCAGUCAACGAAAAGG-AAAUAGUGAGAGGAGAGGGCUUAUUGAAGAGAGCCUCUCAUUUUAAAAUUUCUCUUUAAGCGUGUUCCUUCUAAAGGACACAAGAAACUAAUAUGUUUAUGA
(((...((((.(((((-((((..(((((.((((((.(((........))))))))).)))))..))))).))))....((((.(((.....)))))))............))))..))) ( -30.10)
>DroSec_CAF1 52167 118 + 1
UCAGUUGUUGAGAACA-AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGACUUUCAUUUUAAACAUUCUCUUAAAGCUUGUCCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUAA
..((((.(((......-....(((...(((((((.(((((.(((((......)))))...))))).)))))))...)))(((((........))))))))..))))............. ( -25.00)
>DroSim_CAF1 51581 118 + 1
UCAGUUGUUGAGAACA-AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGCCUUUCAUUUUAAACAUUCUCUUAAAGCUUGUCCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUGA
..((((.(((......-....(((...(((((((.(((((.(((((......)))))...))))).)))))))...)))(((((........))))))))..))))............. ( -25.00)
>DroEre_CAF1 53584 113 + 1
UA-GUUGACAAGGAGAAAGAAAUUGAGAGCAGAGGU----UUGAAGAGAGCCUUUCGUUUUGAAAUUUCUCUUAAGCCCUGUUCCUGAUGAGGGACACAAAAACCU-CGAUUUUUCUAA
..-..........(((((((.(((..((((((.(((----((((.(((((..((((.....)))).))))))))))))))))))..)))((((..........)))-)..))))))).. ( -33.30)
>DroYak_CAF1 53240 116 + 1
UAGGUUUAUGAGGCAAAAGAAAGUGAGAGGAGAGAGUUUAUUGGAGAGAGCCAUUCAUUUAGAAAAUUCUCUUAAGCUUUGUUCGCAAUAAAGGACACAAAAACCA-CGAUUUUUGU--
..(((((.((.........(((((.....((((((((((.(((((..((....))..))))).))))))))))..)))))((((........)))).)).))))).-..........-- ( -25.50)
>consensus
UCAGUUGAUGAGAACA_AAAUAGUGAGAGGAGAGAGUUUAUUGAAGAGAGCCUUUCAUUUUAAAAAUUCUCUUAAAGCUUGUUCCUUCUAAAGGACACAAGAAACUAAUAUUUUUAUAA
......................(((((((((((((((...((((((.(((...))).))))))..))))))))......(((((........))))).............))))))).. (-12.58 = -13.02 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:30 2006