Locus 2987

Sequence ID 2L_DroMel_CAF1
Location 8,532,067 – 8,532,175
Length 108
Max. P 0.623321
window4750 window4751

overview

Window 0

Location 8,532,067 – 8,532,175
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -24.62
Consensus MFE -11.54
Energy contribution -12.22
Covariance contribution 0.69
Combinations/Pair 1.17
Mean z-score -2.79
Structure conservation index 0.47
SVM decision value 0.12
SVM RNA-class probability 0.595550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8532067 108 + 22407834
UCCAAAAAUCAACAGCAAACAACCAUCUGUUGAUUUUCGAAGCCGGAAAAUGCGUAUCCAAAAUGAGGGGAAUUGAACCCAAGCAUCGUAAAUCAGAUUGAGAUAUUA
(((.(((((((((((...........))))))))))).(....))))......((((((((..((((((........)))..((...))...)))..))).))))).. ( -20.90)
>DroSec_CAF1 41300 108 + 1
ACCAAAAAUCAACAGCAAACAACCAUCUGUUGAUUUACGAAGCCGGAAAAUGCGUAUUCAAAAUGGGGGGAAUCGUAUCCGAGCAUCGUAAAUCAAAUUGAGAUAUUA
........................((((.(((((((((((.((((((...((((.((((..........)))))))))))).)).)))))))))))....)))).... ( -28.60)
>DroSim_CAF1 40615 108 + 1
ACCAAAAAUCAACAGCAAACAACCAUCUGUUGAUUUUCGAAGCCGGAAAAUGAGUAUCCAAAAUGGUGGGAAUCGUACCCGAGCAUCGUAAAUCAAAUUGAGAUAUUA
....(((((((((((...........)))))))))))(((.(((((...((((...((((......))))..))))..))).)).))).................... ( -23.80)
>DroEre_CAF1 41192 90 + 1
UCCAAAAGUCAACAGCAAACAAUCAGCUGUUGAUCUUCGGAAACGGAAAAUGCAUAUCCUAUAUGG-------------CAAGCCAUGUAA-----AUUGAGAUAUUA
.......(((((((((.........))))))))).((((....))))......(((((((((((((-------------....))))))).-----...).))))).. ( -25.20)
>consensus
ACCAAAAAUCAACAGCAAACAACCAUCUGUUGAUUUUCGAAGCCGGAAAAUGCGUAUCCAAAAUGGGGGGAAUCGUACCCAAGCAUCGUAAAUCAAAUUGAGAUAUUA
..(((((((((((((...........)))))))))).(((.((.(((.........)))........(((.......)))..)).))).........)))........ (-11.54 = -12.22 +   0.69)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 1

Location 8,532,067 – 8,532,175
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 81.02
Mean single sequence MFE -24.55
Consensus MFE -15.51
Energy contribution -15.95
Covariance contribution 0.44
Combinations/Pair 1.27
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.18
SVM RNA-class probability 0.623321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8532067 108 - 22407834
UAAUAUCUCAAUCUGAUUUACGAUGCUUGGGUUCAAUUCCCCUCAUUUUGGAUACGCAUUUUCCGGCUUCGAAAAUCAACAGAUGGUUGUUUGCUGUUGAUUUUUGGA
...............(((((.((((...(((........))).)))).)))))..((........))(((((((((((((((...........))))))))))))))) ( -23.40)
>DroSec_CAF1 41300 108 - 1
UAAUAUCUCAAUUUGAUUUACGAUGCUCGGAUACGAUUCCCCCCAUUUUGAAUACGCAUUUUCCGGCUUCGUAAAUCAACAGAUGGUUGUUUGCUGUUGAUUUUUGGU
.......((((((((((((((((.((.((((..((((((..........)))).)).....)))))).)))))))))))(((((....)))))..)))))........ ( -26.30)
>DroSim_CAF1 40615 108 - 1
UAAUAUCUCAAUUUGAUUUACGAUGCUCGGGUACGAUUCCCACCAUUUUGGAUACUCAUUUUCCGGCUUCGAAAAUCAACAGAUGGUUGUUUGCUGUUGAUUUUUGGU
...((((.(((..((......(.....)(((.......)))..))..)))))))..............((((((((((((((...........)))))))))))))). ( -23.40)
>DroEre_CAF1 41192 90 - 1
UAAUAUCUCAAU-----UUACAUGGCUUG-------------CCAUAUAGGAUAUGCAUUUUCCGUUUCCGAAGAUCAACAGCUGAUUGUUUGCUGUUGACUUUUGGA
..((((((....-----.((.((((....-------------)))).))))))))............(((((((.((((((((.........)))))))).))))))) ( -25.10)
>consensus
UAAUAUCUCAAUUUGAUUUACGAUGCUCGGGUACGAUUCCCCCCAUUUUGGAUACGCAUUUUCCGGCUUCGAAAAUCAACAGAUGGUUGUUUGCUGUUGAUUUUUGGA
........................((.((((...........((.....))..........)))))).((((((((((((((...........)))))))))))))). (-15.51 = -15.95 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:28 2006