Locus 2986

Sequence ID 2L_DroMel_CAF1
Location 8,530,275 – 8,530,366
Length 91
Max. P 0.663667
window4749

overview

Window 9

Location 8,530,275 – 8,530,366
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 76.45
Mean single sequence MFE -20.53
Consensus MFE -6.79
Energy contribution -8.35
Covariance contribution 1.56
Combinations/Pair 1.28
Mean z-score -2.46
Structure conservation index 0.33
SVM decision value 0.27
SVM RNA-class probability 0.663667
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8530275 91 - 22407834
AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAUUUGUGUCGAAAGGCAUGAUAAACAGAAACAGUUGGGUCGACUAAAUA--A
.(-((((--...((((..(((((........)))............(..((((....))))..)......))...)))).)))))........--. ( -20.90)
>DroSec_CAF1 39524 91 - 1
AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCAAAAGGCAUGAUAAACAGAAACGGUUGCGUGGACUAAAUA--U
..-..((--(.....(((((((...(((.......))).......((..((((....))))..))........)))))))..)))........--. ( -14.20)
>DroSim_CAF1 38846 91 - 1
AC-GACC--AAAAACUAAUCGUGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAACAGAAACGGUUGGGUCGACUAAAUA--A
.(-((((--...((((..(((((........)))...........((..((((....))))..)).....))...)))).)))))........--. ( -22.20)
>DroEre_CAF1 39461 93 - 1
ACCAAGC-GAAAAACUAAUCGCUGGGAUAUAUACAAUCAAUCAAAAUUGUGUUGAAAAGCAUGAUAACCAGAAAUGGCUGUGGCGAUUAUAUA--U
.((.(((-((........))))).))..(((((.((((.......((..((((....))))..))..(((....))).......)))).))))--) ( -23.80)
>DroYak_CAF1 40224 92 - 1
GC-GGCC-AAAAAACUAAUCGCUGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAUCAGAAGCGGUUGUGGCCAUUGUAUA--U
..-((((-(......((((((((..(((.......))).......((..((((....))))..)).......)))))))))))))........--. ( -26.90)
>DroAna_CAF1 23045 91 - 1
AC-GACAUGUCUAACUAAUCGCCAGGAUCUG-GUAAUCAAUCAUAAUUGUGUUGCAUUACU---UAUCUGGAAAAUAUAUGUUUCAUUAAAUAUGA
..-(((((((...........(((((....(-((((((((.(((....)))))).))))))---..))))).....)))))))((((.....)))) ( -15.19)
>consensus
AC_GACC__AAAAACUAAUCGCGGGGAUAUAUACAAUCAAUCAAAAUUGUGUCGAAAGGCAUGAUAAACAGAAACGGUUGGGUCGACUAAAUA__A
...............(((((((...(((.......))).......((((((((....))))))))........)))))))................ ( -6.79 =  -8.35 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006