Locus 2976

Sequence ID 2L_DroMel_CAF1
Location 8,515,029 – 8,515,123
Length 94
Max. P 0.500000
window4724

overview

Window 4

Location 8,515,029 – 8,515,123
Length 94
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 88.40
Mean single sequence MFE -30.84
Consensus MFE -21.64
Energy contribution -22.56
Covariance contribution 0.92
Combinations/Pair 1.07
Mean z-score -1.71
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8515029 94 - 22407834
GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUGGUGGCAAAGGCCUUCGAUAAAUUAUC---------GAUUUCCUUGUCACGAUAUACGGCUUCUG
......(((.(((..---(((((((.....)).))))).((.(((((((.((...((((((...))))---------))...))))))))).)).))))))..... ( -31.20)
>DroSec_CAF1 24339 94 - 1
GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUCGUGGCACAGGCCUUCGAUAAGUUAUC---------GAGUUCCUUGUCACGAUAUACGGCUUCUG
......(((.(((..---(((((((.....)).))))).(((((((((.(((..(((((((...))))---------)))..)))))))))))).))))))..... ( -36.00)
>DroSim_CAF1 24026 94 - 1
GACUCCGCCUGUAAA---AAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC---------GAUUUCCUUGUCACGAUAUACGGCUUCUG
......(((.(((..---(((((((.....)).))))).((.((((((.(((...((((((...))))---------))...))))))))).)).))))))..... ( -31.20)
>DroEre_CAF1 24061 104 - 1
GACUCCGCCUGUAAA--AAAGCCGCUUACAGCUGGCUUGGCGAUGGCACAGACCUUCGAUAAGUUAUCGAUGUUAUCGAUAUCCUUGUCACGAUAUAUGGCUUCGU
((..((((((((...--.(((((((.....)).))))).)))..)))..........((((((.(((((((...)))))))..)))))).........))..)).. ( -29.30)
>DroYak_CAF1 24951 97 - 1
GACUCCGCCUGUAAAAAAAAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC---------GAUUUCUUUGUCCCGAUAUAUGGCCUCUC
......(((((((.....(((((((.....)).)))))..(((.((((.(((...((((((...))))---------))..))).))))))).)))).)))..... ( -26.50)
>consensus
GACUCCGCCUGUAAA___AAGCCGCCUACAGCUGGCUUGGUGGUGGCACAGGCCUUCGAUAAGUUAUC_________GAUUUCCUUGUCACGAUAUACGGCUUCUG
((..((((((((......(((((((.....)).))))).((....))))))))....((((((..(((((.....)))))...)))))).........))..)).. (-21.64 = -22.56 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:01 2006