Locus 2975

Sequence ID 2L_DroMel_CAF1
Location 8,514,307 – 8,514,424
Length 117
Max. P 0.576317
window4723

overview

Window 3

Location 8,514,307 – 8,514,424
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -33.30
Consensus MFE -25.55
Energy contribution -26.68
Covariance contribution 1.13
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.77
SVM decision value 0.09
SVM RNA-class probability 0.576317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8514307 117 + 22407834
UCAGCUUGUAUUACUUCGUCU---UCUUCCUCUAUUUCUUCACCAUCGUCCAGUUCAAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCCUGGCGGUUUGCUCCAGCACCUGUUGGAAC
.....................---........................((((((.....)).(((((((((...(((.(((((((......))))))).)))..))))))))).)))).. ( -32.30)
>DroSec_CAF1 23617 117 + 1
UCAGCUUGUAGUACUUCGUCU---UCUUCCUCCUUUUCCUCACCAUCGUCCAGUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC
.....................---...........((((....(((((.......)))))..(((((((((...(((.(((((((......))))))).)))..)))))))))..)))). ( -37.20)
>DroSim_CAF1 23292 117 + 1
UCAGCUUGUAGUGCUUCGUCU---UCUCCCUCCUCUUCCUCACCAUCGUCCAAUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC
..(((.......)))......---...........((((....(((((.......)))))..(((((((((...(((.(((((((......))))))).)))..)))))))))..)))). ( -38.60)
>DroAna_CAF1 9555 114 + 1
UCAU------UCUCUUCCUCUGGAUCCUCCUCCUGUUCGUCGCCCUCGUCCAGCUCGAUACCCAGGUGCUGUUCCCGUAUCGCCGUCAUCUGUGCAGUCUGCUCCAACAGCUGCUGGAAG
....------...(((((...((.........(((..((.......))..)))..((((((...((.......)).)))))))).........((((.(((......))))))).))))) ( -25.10)
>consensus
UCAGCUUGUAGUACUUCGUCU___UCUUCCUCCUUUUCCUCACCAUCGUCCAGUUCGAUGCCCAGGUGCUGCUCGCGCAUCGCCGUCAGCGUGGCGGUUUGCUCCAGCACCUGUUGGAAC
................................................(((((.........(((((((((...(((.(((((((......))))))).)))..)))))))))))))).. (-25.55 = -26.68 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:00 2006