| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,507,832 – 8,507,936 |
| Length | 104 |
| Max. P | 0.553607 |
| Location | 8,507,832 – 8,507,936 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -26.99 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8507832 104 - 22407834 AGCCAACC----UU-UUGGUACACAUGAAUUAGCUU-----------CUGAAAAAAUGUGGGUCACUGAAAGGAUUUACAUGGAUUAAGGUAUAUUAAGCUGAGUUAGAAAACAAAAAGA .(((((..----..-))))).....(((.(((((((-----------((......(((((((((........)))))))))......))).......)))))).)))............. ( -18.11) >DroSec_CAF1 17162 107 - 1 AGCCAACC----UUUUUGGAACACAUGAAUUAGCUUCGGUUGGAGCUCUGAAAAAAUGUGGGUCC---------CUUACAUGGAUUAAGGGAUAUUUAGCUAAGUUGGAAAACAAAAAGA .......(----((((((...(((((.....((((((....))))))........))))).((((---------((((.......)))))))).((((((...))))))...))))))). ( -27.02) >DroSim_CAF1 16773 116 - 1 AGCCAACC----UUUUUGGUACACAUGAAUUAGCUUCGGUUGGAGCUCUGAAAAAAUGUGGGUCAAUGAAAGGACUUACAUGGAUUAAGGGAUAUUUAGCUAAGUUAGAAAACAAAAAGA .......(----(((((((....).....(((((((.(((((((.((((......(((((((((........)))))))))......))))...))))))))))))))....))))))). ( -30.20) >DroEre_CAF1 16794 114 - 1 UGCCAACC----UUUUUGGUACACACGAAUUAGCUUCAGUUGAAGCUCUGAAAAAAUGUGGGUCAGUGAAAGGAUUUACAUGGACUACAGGGUAUUAAGCUGAGUUAGAAAACAAAAA-- ((((((..----...))))))........((((((.(((((...((((((.....(((((((((........)))))))))......))))))....)))))))))))..........-- ( -29.60) >DroYak_CAF1 17632 120 - 1 GGCAAACCGAACCUUUUGGUGCACAUGAAUUAGCUUCAGUUGGAGCUCUGAAAAAAUGUGGGUCAGUCAAAGGAUUGACAUGGAUUAGGGGUUAUUAAGCUAGGUUGGAAAGCGAAAAGA .((...((.(((((((((((((((((.....((((((....))))))........))))).(((((((....))))))).............)))))))..)))))))...))....... ( -30.02) >consensus AGCCAACC____UUUUUGGUACACAUGAAUUAGCUUCAGUUGGAGCUCUGAAAAAAUGUGGGUCAGUGAAAGGAUUUACAUGGAUUAAGGGAUAUUAAGCUAAGUUAGAAAACAAAAAGA .(((((.........))))).........((((((((((........)))))...(((((((((........))))))))).................)))))(((....)))....... (-15.40 = -16.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:55 2006