Locus 2970

Sequence ID 2L_DroMel_CAF1
Location 8,507,185 – 8,507,280
Length 95
Max. P 0.867451
window4717

overview

Window 7

Location 8,507,185 – 8,507,280
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.97
Mean single sequence MFE -26.27
Consensus MFE -16.01
Energy contribution -16.87
Covariance contribution 0.86
Combinations/Pair 1.05
Mean z-score -2.91
Structure conservation index 0.61
SVM decision value 0.86
SVM RNA-class probability 0.867451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8507185 95 + 22407834
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUAGUUUUCAAUUAGU---------------------GCCCGCGGAUGCGGCAGCUGUCAGCCAUCAAAUCCAAUAU----AAAUCCCCCCC
........((((((((.....(((((((...((...........---------------------))...)))))))(((........)))....))))))))..----........... ( -23.00)
>DroSec_CAF1 16514 98 + 1
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUUGUUUUCAAUUAGU---------------------GCCCGCGGCUGCGGCAGCUGUCAGCCGUCAAAUCCAAUAUAUGUAAAUUC-CCCC
........((((((((.....(((.(((((((....))))))))---------------------))..((((((((((...))).)))))))..))))))))............-.... ( -30.60)
>DroSim_CAF1 16116 94 + 1
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUUGUUUUCAAUUAGU---------------------GCCCGCGGCUGCGGCAGCUGUCGGCCGUCAAAUCCAAUAU----AAAUCC-CCCC
........((((((((.....(((.(((((((....))))))))---------------------))..((((((((((...))).)))))))..))))))))..----......-.... ( -29.90)
>DroEre_CAF1 16246 93 + 1
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUUGUUUUCAAUUAGU---------------------GCCU-CGACUCCGGCAGCUGUCAGCCGUCAAAUCCAAUAU----AAAUCC-CCCC
........((((((((.....(((.(((((((....))))))))---------------------))..-.(((...(((........)))))).))))))))..----......-.... ( -23.50)
>DroYak_CAF1 17048 93 + 1
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUUGUUUUCAAUUAGU---------------------GCCC-AAACUACGGCAGCUGUCAGCCGUCAAAUCCAAUAU----AAAUCC-CCCC
........((((((((.....(((.(((((((....))))))))---------------------))..-.....(((((........)))))..))))))))..----......-.... ( -24.50)
>DroAna_CAF1 448 116 + 1
UUAUCAGCAUCGGGCUAAUCAGCAUCUGAUUAUUUUCAAUUAGUUGGCCAGUUCGGGCUUACCCUGCCUAUGCAUUUAGCAGCUGUCAGUCCACU-AUCCAAUAUA--UAAAUCC-CCCC
...........(((.(((((((...)))))))..........(((((..(((..(((((.((.((((.((......))))))..)).))))))))-..)))))...--......)-)).. ( -26.10)
>consensus
CUAUCAGCAUUGGAUUAAUCAGCAUCUGAUUGUUUUCAAUUAGU_____________________GCCCGCGGCUGCGGCAGCUGUCAGCCGUCAAAUCCAAUAU____AAAUCC_CCCC
........((((((((...((((..(((((((....)))))))......................(((.........))).))))..........))))))))................. (-16.01 = -16.87 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:54 2006