| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 855,395 – 855,498 |
| Length | 103 |
| Max. P | 0.623442 |
| Location | 855,395 – 855,498 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.07 |
| Mean single sequence MFE | -33.73 |
| Consensus MFE | -11.88 |
| Energy contribution | -12.80 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 855395 103 - 22407834 AACGAGUUGCCAUGCAACGGUAAUUU-GUUUGGCAACCGUUACGAGGCGUUGCCAGCCGUGGGGAAACUUUUGGAGACGA--AUGGAGUUGCCACGUAGAUAGAUA .(((.(((((((.((((.......))-)).))))))))))((((.((((...(((.(((..((....))..)))......--.)))...)))).))))........ ( -36.80) >DroSec_CAF1 20758 103 - 1 AACGAGUUGCCAUGCAACGGUAAUUU-GUUUGGCAACCGUUACGAAGCGUGGCCAGCUGUGGGGAAACUGUUGGAGACGA--AUGGAGUUGCCACACAGAUAGAUA ((((.(((((((.((((.......))-)).))))))))))).....(.(((((.((((.(.((....)).(((....)))--..).))))))))).)......... ( -35.80) >DroSim_CAF1 21331 103 - 1 AACGAGUUGCCAUGCAACGGUAAUUU-GUUUGGCAACCGUUACGGGGCGUUGCCAGCUGUGGGGAAACUGUUGGAGACGA--AUGGAGUUGCCACACAGAUAGAUA (((((((((((.......))))))))-)))(((((((.(((....)))))))))).(((((.((.((((.(((....)))--....)))).)).)))))....... ( -37.50) >DroEre_CAF1 20753 101 - 1 AACGAGUUGCCAUGCAACGGUACUUU-GUU--GUGGCCGUUACCAGGCGCUGCCAGCUGUUUGGAAAUGGUUGGAGACCG--ACAGAGUUGCCACAUGGAUAGAUA .....(((.(((((....((((((((-(((--(.(((((((.((((((((.....)).)))))).)))))))(....)))--)))))).)))).)))))...))). ( -36.80) >DroYak_CAF1 19981 103 - 1 AAAGAGUUGCCAUGCAACGGUACCUU-GUU--GUGGCCGUUACCGGGUGUUGCCAGCUGUUUGGAAACUGAUGGAGGCAGAGAAAGAGUUGCCACAUGGAUAGAUA .....(((((...)))))....((..-..(--(((((....(((.....(((((..(((((.(....).))))).))))).....).)).)))))).))....... ( -28.10) >DroPer_CAF1 17345 79 - 1 AAUGAGUUGCCAAGCAACGGUAACUUUGCC--CCGUCCG--------UGCUGCCAGAUGGAUGGA-----------------ACAGAGCUGCCAGAUGCAGAUGUG .....(((((...)))))((((.(((((..--(((((((--------(........)))))))).-----------------.))))).))))............. ( -27.40) >consensus AACGAGUUGCCAUGCAACGGUAAUUU_GUU__GCAACCGUUACGAGGCGUUGCCAGCUGUGGGGAAACUGUUGGAGACGA__AUAGAGUUGCCACAUAGAUAGAUA .....(((((...)))))((((.(((...........((((....))))...(((((.((......)).)))))...........))).))))............. (-11.88 = -12.80 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:24 2006