| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,505,721 – 8,505,840 |
| Length | 119 |
| Max. P | 0.575633 |
| Location | 8,505,721 – 8,505,840 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.33 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -26.18 |
| Energy contribution | -26.98 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8505721 119 + 22407834 CCAAAGGACUUAGUUGGCCCGAGCCGGGCCAAGAGGUAAUAAAGCCAAGGAGCCAGCUUCAAUUUUGCAGCAAGAAAAUAAAGAUUUACCC-AGAUACGAGUACUGGGGCCAAAAGGUCG ......(((((..((((((((...))))))))..(((......)))..((.....(((.((....)).))).................(((-((.((....))))))).))...))))). ( -34.00) >DroSec_CAF1 15068 119 + 1 CCAAAGGACUUAGUUGGCCCGAGCCGAGCCAAGAGGUAAUAAAGCCAAGGAGCCAGCUUCAAUUUUGCAGCAAGAAAAUAAAGAUUUUCCA-AGAUACGAGUACUGGGGCCAAAAGGUCG ......(((((..(((((((.((....((((((((((......)))..((((....))))..)))))..))..((((((....))))))..-...........)).))))))).))))). ( -33.60) >DroSim_CAF1 14687 119 + 1 CCAAAGGACUUAGUUGGCCCGAGCCGAGCCAAGAGGUAAUAAAGCCAAGGAGCCCGCUUCAAUUUUGCAGCAAGAAAAUAAAGAUUUUCCC-AGAUACGAGUACUGGGGCCAAAAGGUCG ......(((((..(((((((.((....((((((((((......)))..((((....))))..)))))..))..((((((....))))))..-...........)).))))))).))))). ( -33.60) >DroEre_CAF1 14712 113 + 1 CCAAAGGACUUACUUGCCCCGAGCCCAGCCAAGAGGUAAUAAAGCCAAGGAGCC-GCUUCAAUUUUGCAGCAAGAAAAUAAAGAUUUCGCCAGGAUACUA------GGGGCAAAAGGUCG ......(((((..(((((((.((.....((....(((......)))..((.((.-((.........)).))..((((.......)))).)).))...)).------))))))).))))). ( -30.10) >DroYak_CAF1 15492 114 + 1 CCAGAGGACUUAGUUGGCCCGAGCCGAGCCAAGAGGUAAUAAAGCCAAGACGCCAGCUUCAAUUUUGCAGCAGGAAAAUAAAGAUUUUCCC-CGAUACUA----U-GGAGCAAAAGGUCG ......((((((((((((..(.((...)))....(((......))).....))))))).....(((((....(((((((....)))))))(-((......----)-)).)))))))))). ( -28.30) >consensus CCAAAGGACUUAGUUGGCCCGAGCCGAGCCAAGAGGUAAUAAAGCCAAGGAGCCAGCUUCAAUUUUGCAGCAAGAAAAUAAAGAUUUUCCC_AGAUACGAGUACUGGGGCCAAAAGGUCG ......(((((..(((((((.......((((((((((......)))..((((....))))..)))))..))..((((((....)))))).................))))))).))))). (-26.18 = -26.98 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:53 2006