Locus 2964

Sequence ID 2L_DroMel_CAF1
Location 8,501,331 – 8,501,447
Length 116
Max. P 0.913167
window4708

overview

Window 8

Location 8,501,331 – 8,501,447
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.57
Mean single sequence MFE -25.62
Consensus MFE -19.54
Energy contribution -20.50
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -2.18
Structure conservation index 0.76
SVM decision value 1.09
SVM RNA-class probability 0.913167
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8501331 116 - 22407834
AACACACACUGUAUCGAAUUGUGGCUGGCAAAAGCAA----AGAGAAAAGAUUCAUCCCAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
..((((..((((((((((((((((((......)))..----........((((((............))))))...((((.............))))))))))))).))))))...)))) ( -29.02)
>DroSec_CAF1 10801 115 - 1
AACA--CACUGUAUCGAAUUGUGGCUGGCAAAAGCAA---AAGAGAAAAGAUCCAUCCGAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
..((--((((((((((((((((((((.((....))..---.)).(((.....((.((((................))))))....)))........)))))))))).))))))...)))) ( -29.29)
>DroSim_CAF1 10352 115 - 1
AACA--CACUGUAUCGAAUUGCGGCUGGCAAAAGCAA---AAGAGAAAAGAUCCAUCCGAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
..((--(((((((((((((((.((((.((....))..---.)).(((.....((.((((................))))))....)))........)).))))))).))))))...)))) ( -25.39)
>DroEre_CAF1 10361 108 - 1
AAC----AAUGUAUCGAAUUGUGGCAGGCACAACCA----CAGAGAAAAGA----UCCCAACAAUUCCGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
.((----(.(((((((((((((((..((.....)).----...........----.........(((((......)))))................)))))))))).)))))....))). ( -24.00)
>DroYak_CAF1 10969 112 - 1
AAC----CCCGUAUCGAAUUGUGGCAGACAAAACGAAGAAAAAAAAAAAGA----UCCCAAGAAUUCCGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
...----...((((((((((((((...........................----((....)).(((((......)))))................)))))))))).))))......... ( -20.40)
>consensus
AACA__CACUGUAUCGAAUUGUGGCUGGCAAAAGCAA___AAGAGAAAAGAU_CAUCCCAACAAUUCUGAAUCACCGGAGGCUAAUUCACAAAUUCCCACAGUUUGCAUACAGAAAUGUG
........((((((((((((((((...((....)).............................(((((......)))))................)))))))))).))))))....... (-19.54 = -20.50 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:45 2006