| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,495,402 – 8,495,507 |
| Length | 105 |
| Max. P | 0.596976 |
| Location | 8,495,402 – 8,495,507 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.25 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -25.19 |
| Energy contribution | -24.00 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8495402 105 - 22407834 CUCCAUUGACGGUUACUCGCUGUGUGAUGAUUGCCAGGCUAUUGCCGAUACCGGCACCUCCCUGAUCGUGGCUCCCUACAAUGCUUACAUUACCCUCUCCGAGAU ..((......))...((((..(.((((((...((((((....(((((....)))))....))))...((((....))))...))...))))))...)..)))).. ( -27.70) >DroSec_CAF1 4552 105 - 1 CUCCAUCGACGGUUACUCGCUGUGCGAUGACUGCCAGGCUAUUGCCGAUACCGGCACCUCCCUGAUCGUGGCUCCCUACUAUGCCUACAUUACCCUGUCAGAGAU ...((((((((((.....))))).))))).(((.((((....(((((....)))))...........(((((..........))).)).....)))).))).... ( -31.70) >DroEre_CAF1 4417 105 - 1 CUCCAUCGACGGCUUCUCCCUGUGCGAUGACUGCCAGGCUAUUGCCGACACCGGCACCUCCCUGAUCGUGGCUCCCUACAACGCCUACAUCACCAUCUUCGAGAU ((((((((((((.......)))).))))).....((((....(((((....)))))....))))...(((((..........))).))............))).. ( -27.30) >DroYak_CAF1 4796 105 - 1 CUCCGUUGAUGGUGAAUCUCUGUGCGAUGACUGCCAGGCUAUUGCCGAUACCGGCACCUCCCUAAUUGUAGCUCCCUACAACGCCUACAUCACGCUCUCCGAGAU (.(((....))).).(((((.(.(((.(((.((..((((...(((((....))))).........((((((....)))))).)))).))))))))...).))))) ( -29.50) >consensus CUCCAUCGACGGUUACUCGCUGUGCGAUGACUGCCAGGCUAUUGCCGAUACCGGCACCUCCCUGAUCGUGGCUCCCUACAACGCCUACAUCACCCUCUCCGAGAU ((((((((((((.......)))).)))))......((((...(((((....)))))...........((((....))))...))))..............))).. (-25.19 = -24.00 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:29 2006