Locus 2954

Sequence ID 2L_DroMel_CAF1
Location 8,493,758 – 8,493,872
Length 114
Max. P 0.963544
window4687

overview

Window 7

Location 8,493,758 – 8,493,872
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -41.88
Consensus MFE -38.46
Energy contribution -39.52
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -2.03
Structure conservation index 0.92
SVM decision value 1.55
SVM RNA-class probability 0.963544
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8493758 114 + 22407834
GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGCAAGAA------UUUAAGAAAUA
.(((((((...(((......)))...)))))))...((((((..((((...((...))..(((((..(((.....)))..))))))))).)))))).......------........... ( -38.00)
>DroSim_CAF1 2980 114 + 1
GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGCAAGAA------UUUAAGAAAUA
.(((((((...(((......)))...)))))))...((((((..((((...((...))..(((((..(((.....)))..))))))))).)))))).......------........... ( -38.00)
>DroEre_CAF1 2658 113 + 1
GCUGCCUCGAUGCUCGAGAUGGCCAGGAGGCAGAAGAGCAGGAAGGCCAGGGCGAAGCAAGCGCAUCGGUUGGUCAUCUUUGUGCGGCUGUCUCCUGAAAGAGA-------UCGGAAAUG
(((..((((.....))))..)))((((((((((..(.((((((.(((((.(.(((.((....)).))).)))))).)).)))).)..)))))))))).......-------......... ( -45.40)
>DroYak_CAF1 3018 120 + 1
GCUGCCUCGAUGCUCGAGAUGGCCAGGAGGCAGAAGAGCAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGAAAAAGAAGUAGUUUGAGAAGUA
(((..((((.....))))..)))((((((((((....(((.(((((.((((.(((.((....)).))).))))...))))).)))..))))))))))....................... ( -46.10)
>consensus
GCUGCCUCGAUGCUCGAGAUGGCCAAGAGGCAGAAGAGCAGGAAGGCCAAGGCGAAGCAAGCGCAUCGGUUUGUCAUCUUUGUGCGGCUGUCUCCUGAAAGAA______UUUAAGAAAUA
(((..((((.....))))..)))((((((((((....(((.(((((.((((.(((.((....)).))).))))...))))).)))..))))))))))....................... (-38.46 = -39.52 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006