| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,491,065 – 8,491,182 |
| Length | 117 |
| Max. P | 0.615222 |
| Location | 8,491,065 – 8,491,182 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.69 |
| Mean single sequence MFE | -33.86 |
| Consensus MFE | -29.42 |
| Energy contribution | -29.26 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8491065 117 - 22407834 CUUUCAAGCUGAGGUGAC---ACCAUUCCAGCAGAAACUUGCUGUCGAUAGCUGCGACGCUCCCUUUGAGUUGCUGGAUCCUCCUCCAAGUCCCUAUGAAUCACACCCAUCUCCUCGGCC .......(((((((.((.---.......((((((....))))))((.((((..(((((.(.......).)))))((((......)))).....))))))..........)).))))))). ( -30.80) >DroSec_CAF1 343 117 - 1 CAUUCAAGCUGAGGGGAC---ACCAUUCCAGCAGCAACUUGCUGUCGAUAGCUGCGACGCUCCUUUUGAGUUGCUGGAUCCUCCUCCAAGUCCCUUCGAAUCACGCCCACCUCCUCGGCC .......(((((((((..---.......((((((....))))))((((..((((((((.(.......).)))))((((......)))))))....))))...........))))))))). ( -35.20) >DroSim_CAF1 294 120 - 1 CAUUCAGGCUGAGGGGACAGCACCAUUCCAGCAGAAACUUGCUGUCGAUAGCUGCGACGCUCCCUUUGAGUUGCUGGAUCCUCCUCCAAGUCCCUAUGAAUCACGCCCACCUCCUCGGCC ......((((((((((.((((.......((((((....))))))......)))).(((((((.....))))...((((......)))).)))..................)))))))))) ( -37.22) >DroEre_CAF1 57 117 - 1 CUUUUGAGCUGAGGAGAC---ACCAUUCCAGCAGAAACUUGCUGUCGAUAGCUGCGACGCUCUCUUCGAGUUGCUGGGUCCUCCUCCAAGUCCCUAUGAAUCACACCCACCUCCUCGGCC .......(((((((((..---.......((((((....))))))..(((....(((((...........)))))((((..((......))..))))...)))........))))))))). ( -34.10) >DroYak_CAF1 319 117 - 1 CAUUCGAGCUGAGUGGAC---ACCAUUCCGACUGAAACUUGCUGUCGAUGGCUGCGACGCUCCAUUCGAGUGGCUGGAUCCUCAUCCAAGUCCCUAUGAAUCACGCCCACCUCCUCGGCC ...(((((..(.((((..---.((((..((((...........))))))))..(((.(((((.....)))))(((((((....)))).)))............))))))))..))))).. ( -32.00) >consensus CAUUCAAGCUGAGGGGAC___ACCAUUCCAGCAGAAACUUGCUGUCGAUAGCUGCGACGCUCCCUUUGAGUUGCUGGAUCCUCCUCCAAGUCCCUAUGAAUCACGCCCACCUCCUCGGCC .......(((((((((..........(((((((..........((((.......))))((((.....)))))))))))............((.....))...........))))))))). (-29.42 = -29.26 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006