Locus 2951

Sequence ID 2L_DroMel_CAF1
Location 8,483,091 – 8,483,183
Length 92
Max. P 0.700701
window4683

overview

Window 3

Location 8,483,091 – 8,483,183
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 78.33
Mean single sequence MFE -22.93
Consensus MFE -15.02
Energy contribution -15.77
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -1.42
Structure conservation index 0.65
SVM decision value 0.35
SVM RNA-class probability 0.700701
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8483091 92 - 22407834
UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAAGUUAUUGUUUUAUUACAUU
...((((((....(((((.((.((((((..((.((.....))....))...)))))).)).--..)))))..))))))................ ( -25.10)
>DroSec_CAF1 23237 92 - 1
UCAGGCUUUUGAGCCGCUGUUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAAGUUAUUGUUUAAUUAUACU
...((((((....(((((....((((((..((.((.....))....))...))))))....--..)))))..))))))................ ( -23.30)
>DroSim_CAF1 23739 92 - 1
UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAAGCGGAUAAGGUUAUUGUUUAAUUAUAAU
...((((((....(((((.((.((((((..((.((.....))....))...)))))).)).--..)))))..))))))................ ( -24.80)
>DroWil_CAF1 41681 87 - 1
UAAGACUCUUAAGGCGCUGCUGCAGAUGCACUGCCUCAUUGGAUGAUGAAGCAUCUGAAAUUAAAAAAGGGAAAAUU-------UAAGUACAAG
.....(((((.(((((.(((.......))).)))))..(..((((......))))..)........)))))......-------.......... ( -19.70)
>DroYak_CAF1 40838 82 - 1
UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA--AAGGAGGAUAAAGUUAAUGAU----------
(((((((....))))((....)).....((((.((((.(..((((......))))..)...--...))))....))))..))).---------- ( -20.10)
>DroAna_CAF1 23663 87 - 1
UGAGGCUCUUGAGGCGCUGUUGCAGGUGAACUGCCUCAUUGGAUGAAGAUGCAUCUGAAAA----UGCAAGUA--GUUG-CGUUUAAAUAUAAG
.........((((((((....)).((....))))))))(..((((......))))..)(((----(((((...--.)))-)))))......... ( -24.60)
>consensus
UCAGGCUUUUGAGCCGCUGCUGCAGAUGAACUGCCUCGUUGGAUGAAGAUGCAUCUGAAGA__AAAGCGGAUAAAGUUAUUGUUUAAUUAUAAU
...((((....)))).(((((((((.....))))....(..((((......))))..).......)))))........................ (-15.02 = -15.77 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:20 2006