Locus 2949

Sequence ID 2L_DroMel_CAF1
Location 8,478,123 – 8,478,219
Length 96
Max. P 0.598603
window4681

overview

Window 1

Location 8,478,123 – 8,478,219
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 86.11
Mean single sequence MFE -23.97
Consensus MFE -17.94
Energy contribution -19.38
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.598603
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8478123 96 + 22407834
--GAGUUAACUAAGCAGUGCAUCUCAACACCCAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAACCGGUUAUAAAGUAAUCGAUAACACAU
--..((((.....((((.((((...((((.....))))....(((((((....)))))))))))))))....(((((((...))))))).)))).... ( -22.60)
>DroSec_CAF1 18483 96 + 1
--GUGUUAAGCAAGCAGUGCCUCUCGACACACAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU
--((((((.(((..(((((........)))...........((((((((....))))))))))..)))....(((((((...))))))).)))))).. ( -27.70)
>DroSim_CAF1 18547 96 + 1
--GUGUUAAACAAGCAGUGCCUCUCGACACCCAUUGUUACUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU
--((((((.....((((........((((.....))))((.((((((((....)))))))).))))))....(((((((...))))))).)))))).. ( -26.30)
>DroEre_CAF1 25403 92 + 1
--GUGUUAAAUAAGCAGUCCA-AUCGACACCCAUU-UUCUUUAAGCAGUU-UCACUGCUUGCGUCCGCGAAGCGGUUAUAGAGUUAUCGAUAAA-AAU
--.((((.....)))).....-(((((........-.....(((((((..-...)))))))...((((...))))...........)))))...-... ( -17.30)
>DroYak_CAF1 35646 95 + 1
UGGUGUUACAUAAGCAGUUCA-ACCGACACACAUU-UUCCUUAAGCAGUU-GGACUGCUUGCCUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU
..((((((..(((((((((((-((.(.........-.........).)))-))))))))))...........(((((((...))))))).)))))).. ( -25.97)
>consensus
__GUGUUAAAUAAGCAGUGCAUCUCGACACCCAUUGUUCCUUAAGCAGUUUUGACUGCUUGUGUCUGCGAAGCGGUUAUAAAGUAAUCGAUAACACAU
..((((((.....((((........((((.....))))...((((((((....))))))))...))))....(((((((...))))))).)))))).. (-17.94 = -19.38 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:18 2006