Locus 2946

Sequence ID 2L_DroMel_CAF1
Location 8,467,933 – 8,468,025
Length 92
Max. P 0.664339
window4675

overview

Window 5

Location 8,467,933 – 8,468,025
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.79
Mean single sequence MFE -31.12
Consensus MFE -20.23
Energy contribution -20.37
Covariance contribution 0.14
Combinations/Pair 1.23
Mean z-score -1.31
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.664339
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8467933 92 + 22407834
----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUCC
----------------..((((((((.((.((..(....)..)).))...))))..(((((((..------------.......))).)))).......((((........)))).)))) ( -29.30)
>DroSec_CAF1 8601 91 + 1
----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC-
----------------((((..((((.((.((..(....)..)).))...))))..)))).....------------..........(((....)))..((((........))))....- ( -28.70)
>DroSim_CAF1 8650 91 + 1
----------------GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA------------AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC-
----------------((((..((((.((.((..(....)..)).))...))))..)))).....------------..........(((....)))..((((........))))....- ( -28.70)
>DroEre_CAF1 8975 103 + 1
----------------GUGGAACCACCUGUGGUGCGAAAGUGCCGCGAUUGUGGACUUGCGAACAUUUGCGAGAGCAAUUUUACUUCUGCGGAUGCAAAGGUUGAAGUCUUACUCAUUC-
----------------(..(((((((.(((((..(....)..)))))...)))).(((((((....)))))))...........)))..)(((((..((((......))))...)))))- ( -33.80)
>DroYak_CAF1 25787 119 + 1
UUCCGACUCCGAUUCCAUGGAACCACCUGUGGUGCGAAAGUGCCGCGAUUGUGGACCCGCGAACAUUUGCGAGAAUGGUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUAGCCACUC-
....(((((((......)))).((((.(((((..(....)..)))))...))))((((.....((((((((..((((....))))..))))))))....))))...)))..........- ( -39.10)
>DroAna_CAF1 8719 103 + 1
----------------GGGGAGCCACCUGUGGUGCGAAAGUACGAGCUCAGAGGCUUCGCGAACAGUUGCGAAAACAAUUUAAUUUCAGCGAAUAUGAAGGGUUAACUUUUACUCAUUC-
----------------(.((((((..((((.((((....)))).)...))).)))))).)...((.((((((((.........)))).))))...))..((((........))))....- ( -27.10)
>consensus
________________GUGGAACCACCUGUGGUGCGAAAGUGCCUCGAUUGUGGACCCGCGAACA____________AUUUUAUUUCUGCGGAUGCAAAGGGUUAAGUCUUACCCAUUC_
......................((((.((.(((((....))))).))...))))..(((((((.....................))).)))).......((((........))))..... (-20.23 = -20.37 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:13 2006