| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,463,339 – 8,463,430 |
| Length | 91 |
| Max. P | 0.723726 |
| Location | 8,463,339 – 8,463,430 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -11.18 |
| Energy contribution | -10.93 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8463339 91 + 22407834 CAUUUUAUGCAUAUAAUCUAAAUAAUAAAAUUGAACCUGAUUACACAUCAAAAUCAAAUUUCUCUCCGUGCAUCGGGGGAGAGAACAAUAA ..............................((((...((((.....))))...)))).(((((((((........)))))))))....... ( -15.00) >DroSim_CAF1 4075 90 + 1 -UUUAUAUGCAUAUAAUCCAAAUAAUAACAUUGAACCUGAUUACAUAUCAAAAUCAAAUUUCUCUCCGUGCAUCGGGGGAGAGAACAAUAA -.............................((((...((((.....))))...)))).(((((((((........)))))))))....... ( -15.70) >DroEre_CAF1 4200 86 + 1 CAUUUCAAUUAUAUAAUCAAAAUAAAAGCAUUGAAAGUGAUGACGU-UCAAAA----UUUUCUCUCUGUGCAAUGGGGGAGAGAACAAUAA ..............................(((((.((....)).)-))))..----((((((((((........))))))))))...... ( -13.50) >DroYak_CAF1 4195 76 + 1 CUUUAUUGUCAUAUAAUCAAAAUAAAAACAU-----------ACGG-CCAUUA---UUUUUCUCUCUGUGCAAUGGGGGAGAGACCAAUAA ..((((((((........(((((((...(..-----------..).-...)))---))))(((((((........))))))))).)))))) ( -11.40) >consensus CAUUAUAUGCAUAUAAUCAAAAUAAAAACAUUGAACCUGAUUACAU_UCAAAA___AAUUUCUCUCCGUGCAACGGGGGAGAGAACAAUAA ..........................................................(((((((((........)))))))))....... (-11.18 = -10.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006