Locus 2940

Sequence ID 2L_DroMel_CAF1
Location 8,443,706 – 8,443,796
Length 90
Max. P 0.944318
window4666

overview

Window 6

Location 8,443,706 – 8,443,796
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 91.85
Mean single sequence MFE -22.30
Consensus MFE -19.61
Energy contribution -21.07
Covariance contribution 1.45
Combinations/Pair 1.13
Mean z-score -2.81
Structure conservation index 0.88
SVM decision value 1.34
SVM RNA-class probability 0.944318
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8443706 90 - 22407834
CGCAUUUUCAUAGUUGGAAAUGUAUCAUUUUCCAAGGAUCCGUCUUCAGUCGCUGCAUUGUUUUUUCGAACUCUUUUUCGUCGCAUUUUU
.(((.........(((((((........))))))).....((.(....).)).)))..(((.....((((......))))..)))..... ( -11.20)
>DroSec_CAF1 3124 90 - 1
CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGCCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU
.((.........((((((..(((((((((....)))))))))..))))))(((.((((((((......)))))))).)))..))...... ( -26.80)
>DroSim_CAF1 2676 90 - 1
CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGUCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU
.((.........((((((.((((((((((....)))))))))).))))))(((.((((((((......)))))))).)))..))...... ( -28.90)
>consensus
CGCAUUUUCAUAGUUGGAAAUGUAUCUUUUUCCAAGGAUACGUCUUCAAUCGCUGAAGAGUUUUUUCGGACUCUUCUGUGUCGCAUUUUU
.((.........((((((.((((((((((....)))))))))).))))))(((.(((((((((....))))))))).)))..))...... (-19.61 = -21.07 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:04 2006