| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 841,591 – 841,686 |
| Length | 95 |
| Max. P | 0.608628 |
| Location | 841,591 – 841,686 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -13.73 |
| Consensus MFE | -11.35 |
| Energy contribution | -12.15 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 841591 95 + 22407834 AACACGUCCAUUAAAUUAAAUGCACAACAAGUUUAGCAUUGCCACUCAUUUCCCCCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .....((.((((......)))).)).....((((.(((((......(((..(((........))).)))........))))).))))........ ( -14.34) >DroSec_CAF1 7005 94 + 1 AACACGUCCAUUAAAUUAAAUGCACAACAAGUUUAGCAUUCCCACUCACUUCC-CCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .....((.((((......)))).)).....((((.(((((.............-(((.....)))............))))).))))........ ( -13.11) >DroSim_CAF1 7677 95 + 1 AACACGUCCAUUAAAUUAAAUGCACAACAAGUUUAGCAUUGCCACUCACUUCCCCCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .....((.((((......)))).)).....((((.((((((((.(((((........)).)))))))...........)))).))))........ ( -14.80) >DroEre_CAF1 6666 95 + 1 AGCACGUCCAUUCGAUUAAAUGCACAACAAGUUUAGCACUGCCAUUCACUUCCCCCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .(((.((.((((......)))).)).....((((.(((.((((.(((((........)).)))))))))))))).....)))............. ( -14.30) >DroYak_CAF1 5793 84 + 1 AACACGUCCAUUAAAUUAAAUGCACAACAAGUUCAGCA-----------UUCCCCCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .....((.((((......)))).)).....(((..(((-----------((...(((.....)))(((....)))..)))))..)))........ ( -12.10) >consensus AACACGUCCAUUAAAUUAAAUGCACAACAAGUUUAGCAUUGCCACUCACUUCCCCCCGUCGAGGGUAUGCAAAUAUAAAUGCGAAACAAAAAACA .....((.((((......)))).)).....((((.(((((..............(((.....)))............))))).))))........ (-11.35 = -12.15 + 0.80)
| Location | 841,591 – 841,686 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -18.70 |
| Energy contribution | -20.50 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 841591 95 - 22407834 UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGGGGGAAAUGAGUGGCAAUGCUAAACUUGUUGUGCAUUUAAUUUAAUGGACGUGUU (((..((..(((((((........)))...((((.....))))))))..))..)))..............((.((((......)))).))..... ( -22.60) >DroSec_CAF1 7005 94 - 1 UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGG-GGAAGUGAGUGGGAAUGCUAAACUUGUUGUGCAUUUAAUUUAAUGGACGUGUU ........((((.((((((.((((..(...((((.....))-))..)..)))).)))))).)))).....((.((((......)))).))..... ( -25.00) >DroSim_CAF1 7677 95 - 1 UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGGGGGAAGUGAGUGGCAAUGCUAAACUUGUUGUGCAUUUAAUUUAAUGGACGUGUU ........((((.(((((..((((..(...(((((....)))))..)..))))..))))).)))).....((.((((......)))).))..... ( -24.30) >DroEre_CAF1 6666 95 - 1 UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGGGGGAAGUGAAUGGCAGUGCUAAACUUGUUGUGCAUUUAAUCGAAUGGACGUGCU ........((((.(((((..((((..(...(((((....)))))..)..))))..))))).))))..(((((.(((((....))))).))).)). ( -25.00) >DroYak_CAF1 5793 84 - 1 UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGGGGGAA-----------UGCUGAACUUGUUGUGCAUUUAAUUUAAUGGACGUGUU ............(((..........((((.(((((....))))).)-----------)))..........((.((((......)))).))))).. ( -19.30) >consensus UGUUUUUUGUUUCGCAUUUAUAUUUGCAUACCCUCGACGGGGGGAAGUGAGUGGCAAUGCUAAACUUGUUGUGCAUUUAAUUUAAUGGACGUGUU ........((((.(((((..(((((((...(((((....)))))..)))))))..))))).)))).....((.((((......)))).))..... (-18.70 = -20.50 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:14 2006