Locus 2935

Sequence ID 2L_DroMel_CAF1
Location 8,425,393 – 8,425,498
Length 105
Max. P 0.512616
window4657

overview

Window 7

Location 8,425,393 – 8,425,498
Length 105
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 89.89
Mean single sequence MFE -23.80
Consensus MFE -17.21
Energy contribution -17.61
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.512616
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8425393 105 + 22407834
AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUGGUUUUAUAUCUAAUCGGAAUUCCAAAA-CCCUAAG
.........(((..((((((((((..(((((.(((........))).)))))..)))))..(((((.....))))))))))..)))((....))....-....... ( -25.40)
>DroSec_CAF1 23499 104 + 1
AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUUGUUUUAUUUCUAAUCAGAAUUACAA-A-CCCUAAG
.......(((((..((...(((((..(((((.(((........))).)))))..))))).((((((.....))))))..))..)))))........-.-....... ( -23.00)
>DroSim_CAF1 23394 104 + 1
AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUGUAGCAUUUUGUUUUAUAUCUAAUCGGAAUUACAA-A-CCCUAAG
.......(((((..((((((((((..(((((.(((........))).)))))..)))).....(((.....))).))))))..)))))........-.-....... ( -22.70)
>DroEre_CAF1 23783 105 + 1
AUUUAAAUUGAUAUGAUGUACUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUGAAUCUUUUGGUUUUAUUUCUAAUGGGGAUUCCAA-AGCCUAAGG
(((((((((.............((..(((((.(((........))).)))))..)))))))))))((((.((((((((..(.....)..))...))-)))).)))) ( -23.61)
>DroYak_CAF1 23917 96 + 1
AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAA-------CUUUUGGUUUUAUUUCUAAUCGGAAUGCCAA---CCUUAAG
....................((((..(((((.(((........))).)))))..))))-------(((..((((.((((((.....))))))..))---))..))) ( -24.30)
>consensus
AUUUAAAUUGAUAUGAUGUAUUUGUGCCGAGUGCACGAUUGUUUGCUUUCGGUGCAAAUUUAAAGCUUUUGGUUUUAUUUCUAAUCGGAAUUCCAA_A_CCCUAAG
....((((..(........(((((..(((((.(((........))).)))))..))))).........)..))))............................... (-17.21 = -17.61 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:55 2006